当前解析结果
SmilChr08G003914| 统一新 Gene ID | SmilChr08G003914 |
|---|---|
| 名称 | SmilChr08G003914 |
| 描述 | uncharacterized SmilChr08G003914 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 46560594 - 46563841 / - |
| NCBI Gene ID | LOC130996834 |
|---|---|
| GeneID | 130996834 |
| locus_tag | - |
| NCBI Name | LOC130996834 |
| 原始查询 | LOC130996834 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | chaperone protein dnaJ-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818378]; symbol=AT2G38000; hit=AT2G38000; species=arabidopsis; confidence=high |
| 产物 | chaperone protein dnaJ-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818378]; symbol=AT2G38000; hit=AT2G38000; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G38000 (AT2G38000)chaperone protein dnaJ-like protein [Source:NCBI gene (formerly Entrezgene);Acc:818378] identity=64.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0316200- identity=63; qcov=0.894; evalue=1.14e-176; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996834 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057778087.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057778087.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057778087.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057778087.1 |
| 5 | Endosome | 内体 | 0.20000 | XP_057778087.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:46560899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr8:46560978 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr8:46561586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:46561952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:46562117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:46562313 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr8:46562313 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C12 |
Chr8:46562807 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:46562819 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | D11 |
Chr8:46562819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:46563513 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,B22,C79,C85 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。