Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003804`

染色体: Chr01 坐标: 56422122-56426058 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003804`
名称	SmilChr01G003804
描述	protein THALLO-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	56422122 - 56426058 / `-`

ID 对照

NCBI Gene ID	`LOC130996846`
GeneID	`130996846`
locus_tag	`-`
NCBI Name	`LOC130996846`
原始查询	`LOC130996846`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein THALLO-like
产物	protein THALLO-like
Arabidopsis	`AT2G43650` (EMB2777) Sas10/U3 ribonucleoprotein (Utp) family protein [Source:NCBI gene (formerly Entrezgene);Acc:818967] identity=37.8; qcov=1.07; evalue=1.16e-19; confidence=low
Rice	`Os01g0104800` - identity=33.5; qcov=0.776; evalue=6.44e-10; confidence=low
GO	GO:0000462 (maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0005730 (nucleolus); GO:0032040 (small-subunit processome)
KEGG	-
Pfam	PF04000 (Sas10_Utp3)
InterPro	-
eggNOG	-
NR	GeneID:130996846

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778096.1`
2	Nucleolus	核仁	0.80000	`XP_057778096.1`
3	Nucleoplasm	核质	0.20000	`XP_057778124.1`
4	Chromosome	染色体	0.00000	`XP_057778124.1`
5	Centromere	着丝粒	0.00000	`XP_057778124.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:56422145`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C11
`Chr1:56422147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A10,C61,C78
`Chr1:56422185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B35,B5,B68,C26,C40
`Chr1:56422187`	`TA`	`T`	1bp_deletion	frameshift_variant	7	A23,B23,B51,B67,C14,C21,C52
`Chr1:56422218`	`CG`	`C`	1bp_deletion	frameshift_variant	56	A15,A18,A23,A7,B101,B104,B109,B117,B119,B120,B126,B129,B135,B138,B15,B17,B2,B20,B21,B24,B25,B26,B27,B3,B33,B4,B44,B48,B58,B61,B62,B68,B71,B72,B74,B80,B90,B92,B99,C25,C29,C30,C31,C45,C48,C49,C50,C55,C60,C62,C63,C75,C80,C84,D1,D3
`Chr1:56422220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B117,B61,C75
`Chr1:56422222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B44,D3
`Chr1:56422235`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B117,B44,D3
`Chr1:56422235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B117,B44,D3
`Chr1:56422246`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B44,D3
`Chr1:56422250`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B44,D3
`Chr1:56422259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,A5,C61,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778124.1

184 aa

184

Sas10_Utp3

PF04000 Sas10_Utp3 52-132 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778124.1`	Pfam	`PF04000`	Sas10_Utp3	Family	52	132	1.2e-15	58.6	Sas10/Utp3/C1D family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057922141.1
AAGGATGAAGAAGGAATGACATATGAGATAGTAAAGAAAGATTTAAATGCATTGACAAAGGAAGAGCAAATGGATGTCGTGTACAGAATATCAACCGACTTTCGAAAAGATGGATCCAAATCCGATGCGTGCAGCAGACTTAGCTCTGCTCCGGAATTAATTGGCCTTTTGTCAGAGCTGAAAGATGCCCTTGAGCAACTTGAGAACAAAGTGAACCCACTTGTAGAAAAGATTAAAGGACGAGAGAGTGGAAAGAAGGG...

XM_057922120.1
AACGTTAAGTGTAGTTGGGGTGATAACGTTAGGTTAGTGGTGTTTTTGCATATTAACCCATATTTTTCCGCCGGCTTTTTCCCGCCACCGCTCTGCTTCTCTCTCCGAAGACGCCTACATCTGCTCAACGCTTCGCCACTGTTTCAGATAGATTTTAGGTTTGCGCAGTGGGAGGAAGAATCATGGGGAAAAAATTAAAAGCCGGGAAGAAGAAGGAAGATAATGGCCGTCCGAAGAAAAATTCAATTCGATTTGATTCT...

CDS

6 records

下载 CDS FASTA

LOC130996846
ATGACATATGAGATAGTAAAGAAAGATTTAAATGCATTGACAAAGGAAGAGCAAATGGATGTCGTGTACAGAATATCAACCGACTTTCGAAAAGATGGATCCAAATCCGATGCGTGCAGCAGACTTAGCTCTGCTCCGGAATTAATTGGCCTTTTGTCAGAGCTGAAAGATGCCCTTGAGCAACTTGAGAACAAAGTGAACCCACTTGTAGAAAAGATTAAAGGACGAGAGAGTGGAAAGAAGGGAGCGATGCGCTATAT...

LOC130996846
ATGGGGAAAAAATTAAAAGCCGGGAAGAAGAAGGAAGATAATGGCCGTCCGAAGAAAAATTCAATTCGATTTGATTCTGATAATGAAGACATGATGGACGACGATATTGATGTTTTTCATAAGAAAAGGAACGTTATACCACTGAACATAAACGAGGACGTGGAAGAATCTGACGAGGATGCCGAGCAGCCTGTGCTAGATTTTGAGGATGAGGATGAGGAAGATGAAGACACTGATGATGATGATGATAAGCCACCAAA...

Protein

6 records

下载 Protein FASTA

XP_057778096.1
MGKKLKAGKKKEDNGRPKKNSIRFDSDNEDMMDDDIDVFHKKRNVIPLNINEDVEESDEDAEQPVLDFEDEDEEDEDTDDDDDKPPKGLAVKIARTQKYLRAKFGDAEDEILDDADEEEPERDFWGKKSDLYGADVGNEPQSSDDEDAAEEEDAVLKRQMTIANNLSMEDYGVEEEPTLQEILDHGKPPSKSSLDK

XP_057778103.1
MGKKLKAGKKKEDNGRPKKNSIRFDSDNEDMMDDDIDVFHKKRNVIPLNINEDVEESDEDAEQPVLDFEDEDEEDEDTDDDDDKPPKGLAVKIARTQKYLRAKFGDAEDEILDDADEEEPERDFWGKKSDLYGADVGNEPQSSDDEDAAEEEDAVLKRQMTIANNLSMEDYGVEEEPTLQEILDHGKPPSKSSLDK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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