Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G003846`

Chromosome: Chr01 Coordinates: 56773403-56776852 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G003846`
Name	SmilChr01G003846
Description	mediator of RNA polymerase II transcription subunit 7a-like
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	56773403 - 56776852 / `-`

ID Mapping

NCBI Gene ID	`LOC130996886`
GeneID	`130996886`
locus_tag	`-`
NCBI Name	`LOC130996886`
Original query	`LOC130996886`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	mediator of RNA polymerase II transcription subunit 7a-like
Product	mediator of RNA polymerase II transcription subunit 7a-like
Arabidopsis	`AT5G03500` (AT5G03500) Mediator complex, subunit Med7 [Source:NCBI gene (formerly Entrezgene);Acc:831822] identity=79.7; qcov=0.949; evalue=7.63e-77; confidence=high
Rice	`Os04g0661800` (OsMED7) - identity=80.4; qcov=0.981; evalue=2.71e-72; confidence=high
GO	GO:0003712 (transcription coregulator activity); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016592 (mediator complex); GO:0070847 (core mediator complex)
KEGG	-
Pfam	PF05983 (Med7)
InterPro	-
eggNOG	-
NR	GeneID:130996886

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778150.1`
2	Nucleoplasm	核质	1.00000	`XP_057778150.1`
3	Chromosome	染色体	0.80000	`XP_057778156.1`
4	Nuclear body	核内小体	0.60000	`XP_057778156.1`
5	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057778156.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:56776287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B28,B91

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057778150.1

178 aa

178

Med7

PF05983 Med7 4-149 aa

XP_057778156.1

168 aa

168

Med7

PF05983 Med7 4-158 aa

XP_057778157.1

156 aa

156

Med7

PF05983 Med7 4-150 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057778150.1`	Pfam	`PF05983`	Med7	Family	4	149	6.4e-43	147.8	MED7 protein
`XP_057778156.1`	Pfam	`PF05983`	Med7	Family	4	158	1.4e-44	153.3	MED7 protein
`XP_057778157.1`	Pfam	`PF05983`	Med7	Family	4	150	2.4e-43	149.2	MED7 protein

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

3 records

Download cDNA FASTA

XM_057922173.1
GTTATAAAATGACATTTTCTGTGTGTAGAAAAGTGAAAATTCACGAAAAAAATACTCCTCTTCACTTCAGTGACAGTAATTGCCGATCGTCTCTCTCAGATCCTTCTTCGTTCTCTCGCTAGCATTCCTCTCCGACAATACGATGGCAACGGCGACTTATCCACCGCCCCCGCCGTATTACAGGCTCTACAAAAACTATTCCGAGGATCCCGATTCCTGCCCCGCGCCGCCGCCTCCTATTCAGGGCCCCTACCTCCTCT...

XM_057922167.1
AAAGTGAAAATTCACGAAAAAAATACTCCTCTTCACTTCAGTGACAGTAATTGCCGATCGTCTCTCTCAGATCCTTCTTCGTTCTCTCGCTAGCATTCCTCTCCGACAATACGATGGCAACGGCGACTTATCCACCGCCCCCGCCGTATTACAGGCTCTACAAAAACTATTCCGAGGATCCCGATTCCTGCCCCGCGCCGCCGCCTCCTATTCAGGGCCCCTACCTCCTCTATGGCGCCAGCTACACGACGGATGATGTC...

CDS

3 records

Download CDS FASTA

LOC130996886
ATGGCAACGGCGACTTATCCACCGCCCCCGCCGTATTACAGGCTCTACAAAAACTATTCCGAGGATCCCGATTCCTGCCCCGCGCCGCCGCCTCCTATTCAGGGCCCCTACCTCCTCTATGGCGCCAGCTACACGACGGATGATGTCCTTCCAGGTCTAGAAGAACAGGGTGTTCGTCAGTTGTACCCTAAAGGGCCCAATATCGATTTCAAGAAAGAGCTCAGGTCTCTTAACAGGGAATTGCAGTTAAATATTTTGGA...

Protein

3 records

Download Protein FASTA

XP_057778150.1
MATATYPPPPPYYRLYKNYSEDPDSCPAPPPPIQGPYLLYGASYTTDDVLPGLEEQGVRQLYPKGPNIDFKKELRSLNRELQLNILELADVLVERPSQYARRVEDISLIFKNLYHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKSFMCLPLFTNEVWLAVVRKLSLCNMLLPIL

XP_057778156.1
MATATYPPPPPYYRLYKNYSEDPDSCPAPPPPIQGPYLLYGASYTTDDVLPGLEEQGVRQLYPKGPNIDFKKELRSLNRELQLNILELADVLVERPSQYARRVEDISLIFKNLYHLLNSLRPHQARATLIHILELQIQRRKQAVEDIKRRREEAQRLLTEALGTLDGQ

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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