Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004011`

染色体: Chr08 坐标: 48494119-48500210 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004011`
名称	SmilChr08G004011
描述	putative protease Do-like 14
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	48494119 - 48500210 / `+`

ID 对照

NCBI Gene ID	`LOC130996914`
GeneID	`130996914`
locus_tag	`-`
NCBI Name	`LOC130996914`
原始查询	`LOC130996914`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative protease Do-like 14
产物	putative protease Do-like 14
Arabidopsis	`AT5G27660` (DEG14) Trypsin family protein with PDZ domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832828] identity=60.9; qcov=0.972; evalue=3.08e-153; confidence=high
Rice	`Os11g0246600` (OsDegp12) - identity=56.5; qcov=0.833; evalue=7.15e-106; confidence=high
GO	GO:0004252 (serine-type endopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis)
KEGG	-
Pfam	PF00089 (Trypsin); PF13180 (PDZ_2); PF13365 (Trypsin_2); PF17820 (PDZ_6)
InterPro	-
eggNOG	-
NR	GeneID:130996914

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057778165.1`
2	Chloroplast	叶绿体	0.80000	`XP_057778161.1`
3	Mitochondrion intermembrane space	Mitochondrion intermembrane space	0.20000	`XP_057778162.1`
4	Chloroplast membrane	叶绿体膜	0.20000	`XP_057778165.1`
5	Nucleus	细胞核	0.00000	`XP_057778161.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:48494552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B71,B89,C70
`Chr8:48494737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr8:48494924`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B28,B7,B80,C62,D6
`Chr8:48495279`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	B63
`Chr8:48495279`	`ACC`	`A`	2bp_deletion	CDS_variant	1	B63
`Chr8:48496017`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,B80
`Chr8:48496112`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,C80
`Chr8:48496333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778161.1

434 aa

217

434

Trypsin

Trypsin_2

PDZ_2

PDZ_6

PF00089 Trypsin 140-318 aa PF13365 Trypsin_2 148-294 aa PF13180 PDZ_2 333-419 aa PF17820 PDZ_6 366-415 aa

XP_057778162.1

418 aa

209

418

Trypsin

Trypsin_2

PDZ_2

PDZ_6

PF00089 Trypsin 124-302 aa PF13365 Trypsin_2 132-278 aa PF13180 PDZ_2 317-403 aa PF17820 PDZ_6 350-399 aa

XP_057778163.1

418 aa

209

418

Trypsin

Trypsin_2

PDZ_2

PDZ_6

PF00089 Trypsin 124-302 aa PF13365 Trypsin_2 132-278 aa PF13180 PDZ_2 317-403 aa PF17820 PDZ_6 350-399 aa

XP_057778165.1

389 aa

194

389

Trypsin

Trypsin_2

PF00089 Trypsin 140-318 aa PF13365 Trypsin_2 148-294 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778161.1`	Pfam	`PF00089`	Trypsin	Domain	140	318	5.7e-19	69.5	Trypsin
`XP_057778161.1`	Pfam	`PF13365`	Trypsin_2	Domain	148	294	1e-33	117.9	Trypsin-like peptidase domain
`XP_057778161.1`	Pfam	`PF13180`	PDZ_2	Domain	333	419	4.6e-09	37.1	PDZ domain
`XP_057778161.1`	Pfam	`PF17820`	PDZ_6	Domain	366	415	3.6e-12	46.5	PDZ domain
`XP_057778162.1`	Pfam	`PF00089`	Trypsin	Domain	124	302	5.1e-19	69.7	Trypsin
`XP_057778162.1`	Pfam	`PF13365`	Trypsin_2	Domain	132	278	9.3e-34	118.0	Trypsin-like peptidase domain
`XP_057778162.1`	Pfam	`PF13180`	PDZ_2	Domain	317	403	4.1e-09	37.3	PDZ domain
`XP_057778162.1`	Pfam	`PF17820`	PDZ_6	Domain	350	399	3.2e-12	46.7	PDZ domain
`XP_057778163.1`	Pfam	`PF00089`	Trypsin	Domain	124	302	5.1e-19	69.7	Trypsin
`XP_057778163.1`	Pfam	`PF13365`	Trypsin_2	Domain	132	278	9.3e-34	118.0	Trypsin-like peptidase domain
`XP_057778163.1`	Pfam	`PF13180`	PDZ_2	Domain	317	403	4.1e-09	37.3	PDZ domain
`XP_057778163.1`	Pfam	`PF17820`	PDZ_6	Domain	350	399	3.2e-12	46.7	PDZ domain
`XP_057778165.1`	Pfam	`PF00089`	Trypsin	Domain	140	318	4.5e-19	69.9	Trypsin
`XP_057778165.1`	Pfam	`PF13365`	Trypsin_2	Domain	148	294	8.2e-34	118.1	Trypsin-like peptidase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009092884.1
TCTCTCACAATTTGGGCCGGCCCATAGTTGTCTTGAACTCCAAGAAAATTGCGCGCACCACTCTTCGCCAGACTCTACTGGAATGCAGCACAGATCATCGGCGTAGAGAGAAGGCAGACGAACAAGAATCTCACCAAGAACAGGAGCAATTTTTTAATAATCTACTTGAACTTTGCAGAAAACACAAGGCGATGCATTTCGTGAGAAAGTTGTCGAACAAAACCATTCTCATCCGTGCAGCGGCTTTGGCTGCAGCTGGT...

XM_057922178.1
TCTCTCACAATTTGGGCCGGCCCATAGTTGTCTTGAACTCCAAGAAAATTGCGCGCACCACTCTTCGCCAGACTCTACTGGAATGCAGCACAGATCATCGGCGTAGAGAGAAGGCAGACGAACAAGAATCTCACCAAGAACAGGAGCAATTTTTTAATAATCTACTTGAACTTTGCAGAAAACACAAGGCGATGCATTTCGTGAGAAAGTTGTCGAACAAAACCATTCTCATCCGTGCAGCGGCTTTGGCTGCAGCTGGT...

CDS

4 records

下载 CDS FASTA

LOC130996914
ATGCATTTCGTGAGAAAGTTGTCGAACAAAACCATTCTCATCCGTGCAGCGGCTTTGGCTGCAGCTGGTTCAGGCACATTCTGTTTCGCCACTTCTTCAGATCATAATGCATCGATATCCGTTTCAATGCCTTTGCCGTTTCGGGATTCCTTAGCATGGCCATGGAGAACTATCGAGGGGAGCCGCCCATTTTCTTCATTTATGCTCTCAAACCATTCACAGCATGGTCTTCTTCCGGTATCCTTTTCAATTCCAGATGT...

LOC130996914
ATGCATTTCGTGAGAAAGTTGTCGAACAAAACCATTCTCATCCGTGCAGCGGCTTTGGCTGCAGCTGGTTCAGGCACATTCTGTTTCGCCACTTCTTCAGATCATACATGGCCATGGAGAACTATCGAGGGGAGCCGCCCATTTTCTTCATTTATGCTCTCAAACCATTCACAGCATGGTCTTCTTCCGGTATCCTTTTCAATTCCAGATGTTGTGCCAGATCCGAATATAAGTGAAGGAGCTGCTCCGGATGCTGGAGA...

Protein

4 records

下载 Protein FASTA

XP_057778161.1
MHFVRKLSNKTILIRAAALAAAGSGTFCFATSSDHNASISVSMPLPFRDSLAWPWRTIEGSRPFSSFMLSNHSQHGLLPVSFSIPDVVPDPNISEGAAPDAGDSPKHSCNCLGRDTIANAAAKLGPAVVNLSSVPEGYVGVYMGKSIGSGTIIDEDGTILTCAHVVVDFQGSKTLPKGKVEVTLQDGRSFEGTVVNADFHADIAIVKIKSKTPLPTAKLGTSSKLRPGDLVVAMGCPLTLQNTVTAGIVSCVDRKASDMG...

XP_057778162.1
MHFVRKLSNKTILIRAAALAAAGSGTFCFATSSDHTWPWRTIEGSRPFSSFMLSNHSQHGLLPVSFSIPDVVPDPNISEGAAPDAGDSPKHSCNCLGRDTIANAAAKLGPAVVNLSSVPEGYVGVYMGKSIGSGTIIDEDGTILTCAHVVVDFQGSKTLPKGKVEVTLQDGRSFEGTVVNADFHADIAIVKIKSKTPLPTAKLGTSSKLRPGDLVVAMGCPLTLQNTVTAGIVSCVDRKASDMGLGGMHREYLQTDCAIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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