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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G004031

染色体: Chr08 坐标: 48767544-48778208 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G004031
名称SmilChr08G004031
描述DNA polymerase zeta catalytic subunit
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向48767544 - 48778208 / -

ID 对照

NCBI Gene IDLOC130996916
GeneID130996916
locus_tag-
NCBI NameLOC130996916
原始查询LOC130996916

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DNA polymerase zeta catalytic subunit
产物DNA polymerase zeta catalytic subunit
ArabidopsisAT1G67500 (REV3)
recovery protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:843071]
identity=47.2; qcov=1.01; evalue=0; confidence=high
RiceOs07g0669000 (P0625E02.117)
-
identity=63.4; qcov=0.08; evalue=9.19e-51; confidence=weak
GOGO:0000166 (nucleotide binding); GO:0000724 (double-strand break repair via homologous recombination); GO:0003677 (DNA binding); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005634 (nucleus); GO:0016035 (zeta DNA polymerase complex); GO:0042276 (error-prone translesion synthesis)
KEGGsmil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage))
PfamPF00136 (DNA_pol_B); PF03104 (DNA_pol_B_exo1); PF14260 (zf-C4pol); PF24055 (POL3_N); PF24065 (REV3_N)
InterPro-
eggNOG-
NRGeneID:130996916

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057778167.1
2 Cytosol 细胞质基质 0.20000 XP_057778167.1
3 Nucleoplasm 核质 0.20000 XP_057778168.1
4 Cytoplasm 细胞质 0.20000 XP_057778171.1
5 Chromosome 染色体 0.00000 XP_057778167.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:48767928 C T EMS_canonical_SNV CDS_variant 2 A24,C4
Chr8:48768163 G A EMS_canonical_SNV CDS_variant 2 B44,B88
Chr8:48768325 G A EMS_canonical_SNV CDS_variant 3 A8,B44,B88
Chr8:48769064 C T EMS_canonical_SNV CDS_variant 1 B107
Chr8:48769353 G A EMS_canonical_SNV CDS_variant 1 B50
Chr8:48769788 C T EMS_canonical_SNV CDS_variant 1 C31
Chr8:48770002 G A EMS_canonical_SNV CDS_variant 1 C83
Chr8:48770382 G A EMS_canonical_SNV stop_gained 1 B13
Chr8:48770382 G A EMS_canonical_SNV CDS_variant 1 B13
Chr8:48770455 G A EMS_canonical_SNV CDS_variant 1 B33
Chr8:48770487 C T EMS_canonical_SNV CDS_variant 1 B4
Chr8:48771388 C T EMS_canonical_SNV CDS_variant 3 B111,C29,C50

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778167.1
1969 aa
N
1
984
1969
REV3_N
POL3_N
DNA_pol_B_exo1
DNA_pol_B
zf-C4pol
C
PF24065 REV3_N 10-63 aa PF24055 POL3_N 64-145 aa PF03104 DNA_pol_B_exo1 1058-1256 aa PF00136 DNA_pol_B 1375-1822 aa PF14260 zf-C4pol 1868-1941 aa
XP_057778168.1
1888 aa
N
1
944
1888
POL3_N
DNA_pol_B_exo1
DNA_pol_B
zf-C4pol
C
PF24055 POL3_N 3-64 aa PF03104 DNA_pol_B_exo1 977-1175 aa PF00136 DNA_pol_B 1294-1741 aa PF14260 zf-C4pol 1787-1860 aa
XP_057778169.1
1872 aa
N
1
936
1872
POL3_N
DNA_pol_B_exo1
DNA_pol_B
zf-C4pol
C
PF24055 POL3_N 3-48 aa PF03104 DNA_pol_B_exo1 961-1159 aa PF00136 DNA_pol_B 1278-1725 aa PF14260 zf-C4pol 1771-1844 aa
XP_057778170.1
1748 aa
N
1
874
1748
DNA_pol_B_exo1
DNA_pol_B
zf-C4pol
C
PF03104 DNA_pol_B_exo1 837-1035 aa PF00136 DNA_pol_B 1154-1601 aa PF14260 zf-C4pol 1647-1720 aa
XP_057778171.1
1639 aa
N
1
820
1639
REV3_N
POL3_N
DNA_pol_B_exo1
DNA_pol_B
C
PF24065 REV3_N 10-63 aa PF24055 POL3_N 64-145 aa PF03104 DNA_pol_B_exo1 1058-1256 aa PF00136 DNA_pol_B 1375-1606 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778167.1 Pfam PF24065 REV3_N Domain 10 63 4.5e-19 69.1 DNA polymerase zeta catalytic subunit, N-terminal
XP_057778167.1 Pfam PF24055 POL3_N Domain 64 145 7.4e-23 81.6 DNA polymerase delta catalytic subunit-like, N-terminal domain
XP_057778167.1 Pfam PF03104 DNA_pol_B_exo1 Family 1058 1256 1.6e-13 51.3 DNA polymerase family B, exonuclease domain
XP_057778167.1 Pfam PF00136 DNA_pol_B Family 1375 1822 1.7e-97 327.8 DNA polymerase family B
XP_057778167.1 Pfam PF14260 zf-C4pol Domain 1868 1941 3.7e-13 50.3 C4-type zinc-finger of DNA polymerase delta
XP_057778168.1 Pfam PF24055 POL3_N Domain 3 64 1.1e-17 65.0 DNA polymerase delta catalytic subunit-like, N-terminal domain
XP_057778168.1 Pfam PF03104 DNA_pol_B_exo1 Family 977 1175 1.4e-13 51.5 DNA polymerase family B, exonuclease domain
XP_057778168.1 Pfam PF00136 DNA_pol_B Family 1294 1741 1.6e-97 327.9 DNA polymerase family B
XP_057778168.1 Pfam PF14260 zf-C4pol Domain 1787 1860 3.5e-13 50.3 C4-type zinc-finger of DNA polymerase delta
XP_057778169.1 Pfam PF24055 POL3_N Domain 3 48 8.6e-15 55.8 DNA polymerase delta catalytic subunit-like, N-terminal domain
XP_057778169.1 Pfam PF03104 DNA_pol_B_exo1 Family 961 1159 1.4e-13 51.5 DNA polymerase family B, exonuclease domain
XP_057778169.1 Pfam PF00136 DNA_pol_B Family 1278 1725 1.6e-97 327.9 DNA polymerase family B
XP_057778169.1 Pfam PF14260 zf-C4pol Domain 1771 1844 3.5e-13 50.3 C4-type zinc-finger of DNA polymerase delta
XP_057778170.1 Pfam PF03104 DNA_pol_B_exo1 Family 837 1035 6.3e-10 39.6 DNA polymerase family B, exonuclease domain
XP_057778170.1 Pfam PF00136 DNA_pol_B Family 1154 1601 1.4e-97 328.1 DNA polymerase family B
XP_057778170.1 Pfam PF14260 zf-C4pol Domain 1647 1720 3.2e-13 50.5 C4-type zinc-finger of DNA polymerase delta
XP_057778171.1 Pfam PF24065 REV3_N Domain 10 63 4.7e-19 69.0 DNA polymerase zeta catalytic subunit, N-terminal
XP_057778171.1 Pfam PF24055 POL3_N Domain 64 145 6.5e-23 81.8 DNA polymerase delta catalytic subunit-like, N-terminal domain
XP_057778171.1 Pfam PF03104 DNA_pol_B_exo1 Family 1058 1256 9.4e-14 52.1 DNA polymerase family B, exonuclease domain
XP_057778171.1 Pfam PF00136 DNA_pol_B Family 1375 1606 6.2e-52 177.6 DNA polymerase family B

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA
XM_057922184.1
GCTTACAAGTCACGGTTCCTCTCATATATATATATATGTAGAATACAAAACCCACAGGCACCGCCAAATCTGCATCTCTCTCAATGTCAAATGGCGGGAGTTAACTGAATAGGGTTCGCAGTAGAGAAAGTAAGAAGCGAAATGGGGAGGAGTTCGCAGCCCCAATTGTTCAGCGTCAGAATAGTTTCGATCGACTACTACATGGCGCCTCCAATTCCCGACTTCGACATTTCTTATAGCTCTTTCCACGGTGGGAAGGT...
XM_057922186.1
CCAGTGATAAGGATATACGGTTCGACGCCGGCTGGTCAGAAGACTTGTTTGCACGTTCATCAAGTTTTACCTTATTTGTATGTTCCTATTTCTGATCTGGGGCCTATAGCAAATGATGAAGCTTAAAGGGAATACTGGCTCAAAACGTCAACATGTGCATGGTTGCAATCTCGTTCGTGCGAGGAAGTTTTACGGTTATCATTCTTCAGAGGAGCTATTTATGAAGATATATTTCTACCATCCACAGGATGTTTCTCGTG...

CDS

5 records

下载 CDS FASTA
LOC130996916
ATGGGGAGGAGTTCGCAGCCCCAATTGTTCAGCGTCAGAATAGTTTCGATCGACTACTACATGGCGCCTCCAATTCCCGACTTCGACATTTCTTATAGCTCTTTCCACGGTGGGAAGGTGAACGAGGTTCCAGTGATAAGGATATACGGTTCGACGCCGGCTGGTCAGAAGACTTGTTTGCACGTTCATCAAGTTTTACCTTATTTGTATGTTCCTATTTCTGATCTGGGGCCTATAGCAAATGATGAAGCTGATTCATG...
LOC130996916
ATGATGAAGCTTAAAGGGAATACTGGCTCAAAACGTCAACATGTGCATGGTTGCAATCTCGTTCGTGCGAGGAAGTTTTACGGTTATCATTCTTCAGAGGAGCTATTTATGAAGATATATTTCTACCATCCACAGGATGTTTCTCGTGCTGCAAATCTTCTTCTGGTAGGTGCTGTACTGGATAAGAATTTGCAGCCATATGAATCACATATACCTTTTCTCCTGCAGTTCTTGATTGACTACAATTTGTATGGAATGGG...

Protein

5 records

下载 Protein FASTA
XP_057778167.1
MGRSSQPQLFSVRIVSIDYYMAPPIPDFDISYSSFHGGKVNEVPVIRIYGSTPAGQKTCLHVHQVLPYLYVPISDLGPIANDEADSCMHSVSLALEKALKLKGNTGSKRQHVHGCNLVRARKFYGYHSSEELFMKIYFYHPQDVSRAANLLLVGAVLDKNLQPYESHIPFLLQFLIDYNLYGMGHLHVSKMKFRHPVPDVYSHQKVKYNGKLRTSGDDSTCMAFQADLGGDFSLATPIWISSTIPDGWIWQFSNQPSSSA...
XP_057778168.1
MKADSCMHSVSLALEKALKLKGNTGSKRQHVHGCNLVRARKFYGYHSSEELFMKIYFYHPQDVSRAANLLLVGAVLDKNLQPYESHIPFLLQFLIDYNLYGMGHLHVSKMKFRHPVPDVYSHQKVKYNGKLRTSGDDSTCMAFQADLGGDFSLATPIWISSTIPDGWIWQFSNQPSSSAGEDNPLFRRQSTSELEADAVAHDIVNQQFISYVSMSQTPSNTKMVQSLIPIWEEEHEANGVTEVMLLDPEKPLPQDVLRDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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