当前解析结果
SmilChr08G004056| 统一新 Gene ID | SmilChr08G004056 |
|---|---|
| 名称 | SmilChr08G004056 |
| 描述 | aspartyl protease family protein 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 49192112 - 49196380 / + |
| NCBI Gene ID | LOC130996931 |
|---|---|
| GeneID | 130996931 |
| locus_tag | - |
| NCBI Name | LOC130996931 |
| 原始查询 | LOC130996931 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aspartyl protease family protein 1-like |
| 产物 | aspartyl protease family protein 1-like |
| Arabidopsis | AT2G17760 (AT2G17760)Eukaryotic aspartyl protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:816285] identity=52.61; qcov=0.94; evalue=3.05e-174; confidence=high |
| Rice | Os04g0228000- identity=48.5; qcov=0.853; evalue=4.02e-140; confidence=high |
| GO | GO:0004190 (aspartic-type endopeptidase activity); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00026 (Asp); PF14541 (TAXi_C); PF14543 (TAXi_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996931 |
| Rank | 定位位置 | 中文 | 五折投票比例 | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778190.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057778190.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:49192689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,D10 |
Chr8:49193769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:49193771 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr8:49194073 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B120 |
Chr8:49194073 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B120 |
Chr8:49194243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B35,C8,C83,D10 |
Chr8:49195178 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B57,C22 |
Chr8:49195192 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B64 |
Chr8:49195892 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B52,C37,C53 |
Chr8:49195894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B52,C37,C53 |
Chr8:49195926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A21,B52,C37,C53 |
Chr8:49195968 |
C |
T |
EMS_canonical_SNV | stop_gained | 15 | A1,A19,A20,B103,B110,B113,B132,B15,B42,B60,B8,C32,C48,C68,C7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778190.1PF00026
Asp 101-438 aa
PF14543
TAXi_N 103-280 aa
PF14541
TAXi_C 300-440 aa
XP_057778191.1PF00026
Asp 43-380 aa
PF14543
TAXi_N 45-222 aa
PF14541
TAXi_C 242-382 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778190.1 |
Pfam | PF00026 |
Asp | Domain | 101 | 438 | 1.1e-21 | 78.4 | Eukaryotic aspartyl protease |
XP_057778190.1 |
Pfam | PF14543 |
TAXi_N | Domain | 103 | 280 | 1.2e-32 | 114.2 | Xylanase inhibitor N-terminal |
XP_057778190.1 |
Pfam | PF14541 |
TAXi_C | Domain | 300 | 440 | 9.3e-17 | 62.0 | Xylanase inhibitor C-terminal |
XP_057778191.1 |
Pfam | PF00026 |
Asp | Domain | 43 | 380 | 7.4e-22 | 78.9 | Eukaryotic aspartyl protease |
XP_057778191.1 |
Pfam | PF14543 |
TAXi_N | Domain | 45 | 222 | 8.9e-33 | 114.6 | Xylanase inhibitor N-terminal |
XP_057778191.1 |
Pfam | PF14541 |
TAXi_C | Domain | 242 | 382 | 7.4e-17 | 62.3 | Xylanase inhibitor C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。