Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004065`

染色体: Chr08 坐标: 49293560-49299785 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004065`
名称	SmilChr08G004065
描述	probable E3 ubiquitin-protein ligase LUL4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	49293560 - 49299785 / `-`

ID 对照

NCBI Gene ID	`LOC130996935`
GeneID	`130996935`
locus_tag	`-`
NCBI Name	`LOC130996935`
原始查询	`LOC130996935`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase LUL4
产物	probable E3 ubiquitin-protein ligase LUL4
Arabidopsis	`AT3G06140` (LUL4) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819787] identity=56.9; qcov=0.739; evalue=3.01e-106; confidence=high
Rice	`Os05g0397650` (OsRFPHC-8) - identity=55.5; qcov=0.689; evalue=2.74e-94; confidence=high
GO	GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF26192 (RNF157-like_N)
InterPro	-
eggNOG	-
NR	GeneID:130996935

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057778198.1`
2	Nucleus	细胞核	0.40000	`XP_057778198.1`
3	Chromosome	染色体	0.00000	`XP_057778198.1`
4	Centromere	着丝粒	0.00000	`XP_057778198.1`
5	Chromatin	染色质	0.00000	`XP_057778198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:49296197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C18
`Chr8:49296206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B47,B55
`Chr8:49298033`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:49299063`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:49299082`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B41,B71,B89,C70
`Chr8:49299211`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B41
`Chr8:49299211`	`TG`	`T`	1bp_deletion	CDS_variant	1	B41
`Chr8:49299458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr8:49299507`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778198.1

419 aa

210

419

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 158-318 aa PF13920 zf-C3HC4_3 339-385 aa PF13639 zf-RING_2 340-380 aa PF00097 zf-C3HC4 341-379 aa

XP_057778199.1

402 aa

201

402

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 158-318 aa PF13920 zf-C3HC4_3 339-385 aa PF13639 zf-RING_2 340-380 aa PF00097 zf-C3HC4 341-379 aa

XP_057778200.1

395 aa

198

395

RNF157-like_N

zf-C3HC4_3

zf-RING_2

zf-C3HC4

PF26192 RNF157-like_N 158-318 aa PF13920 zf-C3HC4_3 339-385 aa PF13639 zf-RING_2 340-380 aa PF00097 zf-C3HC4 341-379 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778198.1`	Pfam	`PF26192`	RNF157-like_N	Domain	158	318	4e-66	222.9	RNF157-like N-terminal domain
`XP_057778198.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	339	385	5.2e-17	62.1	Zinc finger, C3HC4 type (RING finger)
`XP_057778198.1`	Pfam	`PF13639`	zf-RING_2	Domain	340	380	1.2e-07	32.5	Ring finger domain
`XP_057778198.1`	Pfam	`PF00097`	zf-C3HC4	Domain	341	379	0.00025	21.5	Zinc finger, C3HC4 type (RING finger)
`XP_057778199.1`	Pfam	`PF26192`	RNF157-like_N	Domain	158	318	3.8e-66	223.0	RNF157-like N-terminal domain
`XP_057778199.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	339	385	4.9e-17	62.2	Zinc finger, C3HC4 type (RING finger)
`XP_057778199.1`	Pfam	`PF13639`	zf-RING_2	Domain	340	380	1.2e-07	32.6	Ring finger domain
`XP_057778199.1`	Pfam	`PF00097`	zf-C3HC4	Domain	341	379	0.00024	21.6	Zinc finger, C3HC4 type (RING finger)
`XP_057778200.1`	Pfam	`PF26192`	RNF157-like_N	Domain	158	318	3.7e-66	223.0	RNF157-like N-terminal domain
`XP_057778200.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	339	385	4.8e-17	62.2	Zinc finger, C3HC4 type (RING finger)
`XP_057778200.1`	Pfam	`PF13639`	zf-RING_2	Domain	340	380	1.2e-07	32.6	Ring finger domain
`XP_057778200.1`	Pfam	`PF00097`	zf-C3HC4	Domain	341	379	0.00024	21.6	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009092885.1
TCGCTCCACTCCAGCCAAAGGAATTGCATAGAACGTCAACTTATTTCAATTTTCAATTCTTTTTAAGTATTTATTCCTCTTTCCAAACGTCAAGTTTTATTCCTCCTCCACCTCCGCCGTCGCCGCCGCCTCCCGCCGCCGCCATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACCCCCACCACTACCACTTCCCCCACCCCCTCCCACCTTCTCCTCGTCAAACCCCCCTCCGCCACCA...

XM_057922215.1
GTACACACTTCACACACGGTTTTGTTTATTTAAAAGGAAAACAAAAAAAGTAGAAAAAAAAAAGTCGCTCCACTCCAGCCAAAGGAATTGCATAGAACGTCAACTTATTTCAATTTTCAATTCTTTTTAAGTATTTATTCCTCTTTCCAAACGTCAAGTTTTATTCCTCCTCCACCTCCGCCGTCGCCGCCGCCTCCCGCCGCCGCCATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACC...

CDS

3 records

下载 CDS FASTA

LOC130996935
ATGGGCCTCTCCTGGAGCAAAAGGCGCCGCCACGAGAATCAGCAAGCCCCACCCCCACCACTACCACTTCCCCCACCCCCTCCCACCTTCTCCTCGTCAAACCCCCCTCCGCCACCAACTCCACCGCCCCCACAACAACCATCGCCGCCCCCGGCCCCGCCCCCCAGCAGCTGCAATCCAGCCACAACCAGCTATGCTTTCGCGGCCAACGCCCCTCATTCAGCCGCCCCCTATCCCGCGCTTCTTCCGCCCCCTTACGC...

Protein

3 records

下载 Protein FASTA

XP_057778198.1
MGLSWSKRRRHENQQAPPPPLPLPPPPPTFSSSNPPPPPTPPPPQQPSPPPAPPPSSCNPATTSYAFAANAPHSAAPYPALLPPPYAPPPPPPYNYSYNFSGYYSRPVHMMGHHNYRPYYVPQISGWGPSAAPLPQLPPLQPAPYVDHQSAKKVKNDVNVHKDTIRLQLDDLSPDCHLVTFTFDALVDGRITIFYFAKEGENCKFSPVYPEIVPVKIPFQKGLGQKFCQPSGTGVDLGFFDTDDLSKPVPEEDIYPLVII...

XP_057778199.1
MGLSWSKRRRHENQQAPPPPLPLPPPPPTFSSSNPPPPPTPPPPQQPSPPPAPPPSSCNPATTSYAFAANAPHSAAPYPALLPPPYAPPPPPPYNYSYNFSGYYSRPVHMMGHHNYRPYYVPQISGWGPSAAPLPQLPPLQPAPYVDHQSAKKVKNDVNVHKDTIRLQLDDLSPDCHLVTFTFDALVDGRITIFYFAKEGENCKFSPVYPEIVPVKIPFQKGLGQKFCQPSGTGVDLGFFDTDDLSKPVPEEDIYPLVII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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