当前解析结果
SmilChr08G004048| 统一新 Gene ID | SmilChr08G004048 |
|---|---|
| 名称 | SmilChr08G004048 |
| 描述 | probable microtubule-binding protein TANGLED |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 48974358 - 48976630 / - |
| NCBI Gene ID | LOC130996941 |
|---|---|
| GeneID | 130996941 |
| locus_tag | - |
| NCBI Name | LOC130996941 |
| 原始查询 | LOC130996941 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable microtubule-binding protein TANGLED |
| 产物 | probable microtubule-binding protein TANGLED |
| Arabidopsis | AT3G05330 (ATN)cyclin family [Source:NCBI gene (formerly Entrezgene);Acc:819697] identity=50; qcov=1.03; evalue=1.55e-104; confidence=high |
| Rice | Os02g0459300- identity=39.8; qcov=0.931; evalue=3.74e-46; confidence=medium |
| GO | GO:0008017 (microtubule binding); GO:2000694 (regulation of phragmoplast microtubule organization) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996941 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778209.1 |
| 2 | Chromosome | 染色体 | 1.00000 | XP_057778209.1 |
| 3 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057778209.1 |
| 4 | Spindle | Spindle | 1.00000 | XP_057778209.1 |
| 5 | Spindle pole | Spindle pole | 1.00000 | XP_057778209.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:48974537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B16,B5,B55 |
Chr8:48974606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr8:48974734 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr8:48974809 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B45,C12,D10,D4 |
Chr8:48974816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B120,B139,B62,B98,C18 |
Chr8:48974915 |
ACT |
A |
2bp_deletion | frameshift_variant | 5 | B10,B12,B16,B49,B5 |
Chr8:48974915 |
ACT |
A |
2bp_deletion | CDS_variant | 5 | B10,B12,B16,B49,B5 |
Chr8:48974935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B98,C22 |
Chr8:48974949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B98,C22 |
Chr8:48974958 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | B108,B111,B54,B79,C43,C9 |
Chr8:48974993 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B103 |
Chr8:48975010 |
TG |
T |
1bp_deletion | frameshift_variant | 11 | B100,B45,B47,B74,C35,C36,C38,C4,C70,C71,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。