当前解析结果
SmilChr08G004077| 统一新 Gene ID | SmilChr08G004077 |
|---|---|
| 名称 | SmilChr08G004077 |
| 描述 | uncharacterized SmilChr08G004077 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 49393341 - 49395215 / + |
| NCBI Gene ID | LOC130996945 |
|---|---|
| GeneID | 130996945 |
| locus_tag | - |
| NCBI Name | LOC130996945 |
| 原始查询 | LOC130996945 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| 产物 | hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333]; symbol=AT5G33406; hit=AT5G33406; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G33406 (AT5G33406)hAT dimerization domain-containing protein / transposase-like protein [Source:NCBI gene (formerly Entrezgene);Acc:833333] identity=68.4; qcov=0.832; evalue=8.34e-132; confidence=high |
| Rice | Os09g0499600- identity=42.1; qcov=0.984; evalue=2.14e-82; confidence=medium |
| GO | GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996945 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778214.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057778214.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778214.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778214.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778214.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:49393610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr8:49393682 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,C59,C61 |
Chr8:49393715 |
T |
TTA |
2bp_insertion | frameshift_variant | 1 | C79 |
Chr8:49393715 |
T |
TTA |
2bp_insertion | CDS_variant | 1 | C79 |
Chr8:49393737 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B90,B93,C2,C39,C45 |
Chr8:49393750 |
T |
TA |
1bp_insertion | frameshift_variant | 3 | A16,A4,C1 |
Chr8:49393750 |
T |
TA |
1bp_insertion | CDS_variant | 3 | A16,A4,C1 |
Chr8:49393763 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,C37,C8 |
Chr8:49393787 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B21,B77,C49 |
Chr8:49393790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B98,C48,C64 |
Chr8:49393791 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,B128,B17 |
Chr8:49393795 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778214.1PF04937
DUF659 3-37 aa
PF05699
Dimer_Tnp_hAT 265-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778214.1 |
Pfam | PF04937 |
DUF659 | Domain | 3 | 37 | 5.9e-11 | 42.9 | Domain of unknown function (DUF659) |
XP_057778214.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 265 | 315 | 1.1e-09 | 38.6 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。