当前解析结果
SmilChr08G000022| 统一新 Gene ID | SmilChr08G000022 |
|---|---|
| 名称 | SmilChr08G000022 |
| 描述 | uncharacterized SmilChr08G000022 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 154534 - 156108 / - |
| NCBI Gene ID | LOC130996981 |
|---|---|
| GeneID | 130996981 |
| locus_tag | - |
| NCBI Name | LOC130996981 |
| 原始查询 | LOC130996981 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827264]; symbol=AT4G15830; hit=AT4G15830; species=arabidopsis; confidence=high |
| 产物 | ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827264]; symbol=AT4G15830; hit=AT4G15830; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G15830 (AT4G15830)ARM repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827264] identity=58.9; qcov=0.972; evalue=6.62e-89; confidence=high |
| Rice | Os01g0931200- identity=53.1; qcov=0.988; evalue=1.05e-81; confidence=high |
| GO | GO:0000226 (microtubule cytoskeleton organization); GO:0005881 (cytoplasmic microtubule); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF12348 (CLASP_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996981 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778245.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057778245.1 |
| 3 | Cytoplasm | 细胞质 | 1.00000 | XP_057778245.1 |
| 4 | Cytosol | 细胞质基质 | 1.00000 | XP_057778245.1 |
| 5 | Nuclear body | 核内小体 | 0.20000 | XP_057778245.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:155049 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B67 |
Chr8:155082 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,B42,B44,D6 |
Chr8:155093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B35,B42,B44,D6 |
Chr8:155105 |
GGA |
G |
2bp_deletion | frameshift_variant | 1 | B17 |
Chr8:155105 |
GGA |
G |
2bp_deletion | CDS_variant | 1 | B17 |
Chr8:155374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B108,C13 |
Chr8:155522 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr8:156047 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B136,C1 |
Chr8:156069 |
GC |
G |
1bp_deletion | frameshift_variant | 4 | B48,B97,C28,C79 |
Chr8:156069 |
GC |
G |
1bp_deletion | CDS_variant | 4 | B48,B97,C28,C79 |
Chr8:156075 |
CG |
C |
1bp_deletion | frameshift_variant | 8 | B40,B53,B77,C15,C32,C45,C68,C78 |
Chr8:156084 |
TCA |
T |
2bp_deletion | frameshift_variant | 2 | B81,C10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778245.1PF12348
CLASP_N 53-215 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778245.1 |
Pfam | PF12348 |
CLASP_N | Repeat | 53 | 215 | 1.2e-08 | 35.5 | CLASP N terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。