当前解析结果
SmilChr08G000044| 统一新 Gene ID | SmilChr08G000044 |
|---|---|
| 名称 | SmilChr08G000044 |
| 描述 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 288764 - 290086 / - |
| NCBI Gene ID | LOC130996983 |
|---|---|
| GeneID | 130996983 |
| locus_tag | - |
| NCBI Name | LOC130996983 |
| 原始查询 | LOC130996983 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| 产物 | pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like |
| Arabidopsis | AT3G26040 (AT3G26040)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822201] identity=30.4; qcov=1.02; evalue=1.22e-57; confidence=low |
| Rice | Os04g0500700 (OsHCT1)hydroxycinnamoyltransferase 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4336306] identity=25.2; qcov=0.966; evalue=3.29e-23; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996983 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057778247.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057778247.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778247.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778247.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778247.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:288766 |
A |
AGG |
2bp_insertion | frameshift_variant | 4 | A25,B131,C33,C42 |
Chr8:288766 |
A |
AGG |
2bp_insertion | CDS_variant | 4 | A25,B131,C33,C42 |
Chr8:288784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,C42 |
Chr8:288787 |
T |
TG |
1bp_insertion | frameshift_variant | 27 | A14,A8,B105,B107,B11,B119,B12,B122,B125,B13,B132,B134,B135,B18,B24,B38,B53,B76,B77,B8,B86,C14,C26,C37,C63,C84,D5 |
Chr8:288791 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,B86,C84 |
Chr8:288813 |
GGT |
G |
2bp_deletion | frameshift_variant | 13 | A11,B17,B22,B23,B62,B72,B98,C17,C22,C32,C45,C78,C9 |
Chr8:288820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,B46,B51 |
Chr8:288830 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,B17,B98 |
Chr8:288839 |
C |
T |
EMS_canonical_SNV | stop_gained | 3 | B25,B46,B51 |
Chr8:288839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,B46,B51 |
Chr8:288870 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,C55 |
Chr8:288889 |
T |
TGC |
2bp_insertion | frameshift_variant | 129 | A1,A10,A14,A15,A18,A21,A22,A23,A3,A4,A7,A9,B105,B106,B109,B114,B115,B117,B118,B123,B126,B127,B129,B130,B131,B134,B135,B138,B14,B140,B15,B26,B27,B29,B30,B31,B32,B33,B35,B36,B38,B39,B45,B46,B47,B48,B49,B52,B53,B56,B58,B59,B6,B60,B61,B63,B64,B69,B71,B73,B74,B77,B78,B79,B8,B81,B82,B83,B85,B87,B88,B9,B91,B92,B97,C1,C10,C11,C12,C14,C15,C16,C17,C18,C20,C22,C23,C24,C3,C30,C36,C39,C41,C43,C45,C46,C47,C5,C50,C51,C54,C55,C56,C57,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C74,C77,C78,C8,C80,C82,C84,C85,C9,D10,D11,D4,D6,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778247.1PF02458
Transferase 2-432 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778247.1 |
Pfam | PF02458 |
Transferase | Family | 2 | 432 | 7.7e-66 | 223.3 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。