Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000044

染色体: Chr08 坐标: 288764-290086 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000044
名称SmilChr08G000044
描述pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向288764 - 290086 / -

ID 对照

NCBI Gene IDLOC130996983
GeneID130996983
locus_tag-
NCBI NameLOC130996983
原始查询LOC130996983

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like
产物pelargonidin 3-O-(6-caffeoylglucoside) 5-O-(6-O-malonylglucoside) 4'''-malonyltransferase-like
ArabidopsisAT3G26040 (AT3G26040)
HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822201]
identity=30.4; qcov=1.02; evalue=1.22e-57; confidence=low
RiceOs04g0500700 (OsHCT1)
hydroxycinnamoyltransferase 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4336306]
identity=25.2; qcov=0.966; evalue=3.29e-23; confidence=low
GO-
KEGG-
PfamPF02458 (Transferase)
InterPro-
eggNOG-
NRGeneID:130996983

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057778247.1
2 Cytosol 细胞质基质 1.00000 XP_057778247.1
3 Nucleus 细胞核 0.00000 XP_057778247.1
4 Chromosome 染色体 0.00000 XP_057778247.1
5 Centromere 着丝粒 0.00000 XP_057778247.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:288766 A AGG 2bp_insertion frameshift_variant 4 A25,B131,C33,C42
Chr8:288766 A AGG 2bp_insertion CDS_variant 4 A25,B131,C33,C42
Chr8:288784 C T EMS_canonical_SNV CDS_variant 2 A25,C42
Chr8:288787 T TG 1bp_insertion frameshift_variant 27 A14,A8,B105,B107,B11,B119,B12,B122,B125,B13,B132,B134,B135,B18,B24,B38,B53,B76,B77,B8,B86,C14,C26,C37,C63,C84,D5
Chr8:288791 C T EMS_canonical_SNV CDS_variant 3 B12,B86,C84
Chr8:288813 GGT G 2bp_deletion frameshift_variant 13 A11,B17,B22,B23,B62,B72,B98,C17,C22,C32,C45,C78,C9
Chr8:288820 C T EMS_canonical_SNV CDS_variant 3 B25,B46,B51
Chr8:288830 C T EMS_canonical_SNV CDS_variant 3 A11,B17,B98
Chr8:288839 C T EMS_canonical_SNV stop_gained 3 B25,B46,B51
Chr8:288839 C T EMS_canonical_SNV CDS_variant 3 B25,B46,B51
Chr8:288870 C T EMS_canonical_SNV CDS_variant 2 C20,C55
Chr8:288889 T TGC 2bp_insertion frameshift_variant 129 A1,A10,A14,A15,A18,A21,A22,A23,A3,A4,A7,A9,B105,B106,B109,B114,B115,B117,B118,B123,B126,B127,B129,B130,B131,B134,B135,B138,B14,B140,B15,B26,B27,B29,B30,B31,B32,B33,B35,B36,B38,B39,B45,B46,B47,B48,B49,B52,B53,B56,B58,B59,B6,B60,B61,B63,B64,B69,B71,B73,B74,B77,B78,B79,B8,B81,B82,B83,B85,B87,B88,B9,B91,B92,B97,C1,C10,C11,C12,C14,C15,C16,C17,C18,C20,C22,C23,C24,C3,C30,C36,C39,C41,C43,C45,C46,C47,C5,C50,C51,C54,C55,C56,C57,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C74,C77,C78,C8,C80,C82,C84,C85,C9,D10,D11,D4,D6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057778247.1
440 aa
N
1
220
440
Transferase
C
PF02458 Transferase 2-432 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778247.1 Pfam PF02458 Transferase Family 2 432 7.7e-66 223.3 Transferase family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057922264.1
ATGAAGATGAACAAGTTGAGCAGAAAGTTGATAAAACCACACACCCCAACCCCTCAAACCCTCAAGAATTTCAAGTTATCGTATCCAGATGAGCTTAGTCCCCCGGTATATTTCGCAGTTGTTCTGTTTTACGAATCGAAACCCGAAGACGGCAGCCTCCGGTTGGAAGAATCACTGGCCAGAATCTTGGTTGAATTCTACCCTCTTGCGGGAAGATTCATCAAGAATGACAGTTTGATTGATTGCAGCGACGAGGGAGC...

CDS

1 records

下载 CDS FASTA
LOC130996983
ATGAAGATGAACAAGTTGAGCAGAAAGTTGATAAAACCACACACCCCAACCCCTCAAACCCTCAAGAATTTCAAGTTATCGTATCCAGATGAGCTTAGTCCCCCGGTATATTTCGCAGTTGTTCTGTTTTACGAATCGAAACCCGAAGACGGCAGCCTCCGGTTGGAAGAATCACTGGCCAGAATCTTGGTTGAATTCTACCCTCTTGCGGGAAGATTCATCAAGAATGACAGTTTGATTGATTGCAGCGACGAGGGAGC...

Protein

1 records

下载 Protein FASTA
XP_057778247.1
MKMNKLSRKLIKPHTPTPQTLKNFKLSYPDELSPPVYFAVVLFYESKPEDGSLRLEESLARILVEFYPLAGRFIKNDSLIDCSDEGAELVEAEAPDVELIDLITKIENDQLDYLLPEQHFRPSEAPQNPLLSIQITRFSCGGAAIAISVYHRVFDASSLGTLVAAWSDAANPDHAKRVIKPSFPLPSLLPSVTGVDNLAIDVGPTPDSREQSVGADHKVVLKRVLFNEEAITRLKSRISQTNGKPLSGVRVVCAVIAKAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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