当前解析结果
SmilChr08G000072| 统一新 Gene ID | SmilChr08G000072 |
|---|---|
| 名称 | SmilChr08G000072 |
| 描述 | putative disease resistance protein At1g50180 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 421844 - 427440 / + |
| NCBI Gene ID | LOC130996991 |
|---|---|
| GeneID | 130996991 |
| locus_tag | - |
| NCBI Name | LOC130996991 |
| 原始查询 | LOC130996991 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein At1g50180 |
| 产物 | putative disease resistance protein At1g50180 |
| Arabidopsis | AT1G58390 (AT1G58390)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842208] identity=32.3; qcov=0.988; evalue=7.84e-127; confidence=low |
| Rice | Os07g0186500- identity=26.6; qcov=0.984; evalue=2.83e-69; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996991 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778255.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778255.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778255.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778255.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778255.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:422231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,C27,C42 |
Chr8:422267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B40,B5,B56,C27,C42 |
Chr8:422269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C31 |
Chr8:422283 |
AGC |
A |
2bp_deletion | frameshift_variant | 4 | A9,B69,B72,C87 |
Chr8:422283 |
AGC |
A |
2bp_deletion | CDS_variant | 4 | A9,B69,B72,C87 |
Chr8:422332 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:422567 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B58 |
Chr8:422576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B40,B5,C40 |
Chr8:422582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A5,B97 |
Chr8:422612 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C40,C55 |
Chr8:422639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C32,C40 |
Chr8:422640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778255.1PF18052
Rx_N 5-89 aa
PF00931
NB-ARC 172-346 aa
PF23559
WHD_DRP 444-518 aa
PF23598
LRR_14 590-908 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778255.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 89 | 1.1e-17 | 64.6 | Rx N-terminal domain |
XP_057778255.1 |
Pfam | PF00931 |
NB-ARC | Domain | 172 | 346 | 2.1e-35 | 122.6 | NB-ARC domain |
XP_057778255.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 444 | 518 | 1.2e-12 | 48.4 | Disease resistance protein Winged helix domain |
XP_057778255.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 590 | 908 | 9.7e-27 | 94.4 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。