当前解析结果
SmilChr08G000079| 统一新 Gene ID | SmilChr08G000079 |
|---|---|
| 名称 | SmilChr08G000079 |
| 描述 | cytochrome P450 71B25-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 461649 - 462395 / + |
| NCBI Gene ID | LOC130996993 |
|---|---|
| GeneID | 130996993 |
| locus_tag | - |
| NCBI Name | LOC130996993 |
| 原始查询 | LOC130996993 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 71B25-like |
| 产物 | cytochrome P450 71B25-like |
| Arabidopsis | AT3G26270 (CYP71B25)cytochrome P450, family 71, subfamily B, polypeptide 25 [Source:NCBI gene (formerly Entrezgene);Acc:822230] identity=44.6; qcov=0.665; evalue=7.93e-23; confidence=medium |
| Rice | Os09g0275400- identity=38.4; qcov=0.802; evalue=5.45e-21; confidence=medium |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450); PF18052 (Rx_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130996993 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057778257.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778257.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778257.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778257.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778257.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:461744 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:461790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr8:461793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C58,C80 |
Chr8:462116 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C17 |
Chr8:462116 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C17 |
Chr8:462130 |
TG |
* |
1bp_deletion | CDS_variant | 4 | A11,B119,B41,B98 |
Chr8:462131 |
G |
GA |
1bp_insertion | frameshift_variant | 72 | A13,A14,A18,A20,A21,A4,B100,B101,B104,B105,B106,B114,B117,B12,B126,B137,B140,B15,B16,B17,B28,B3,B45,B47,B51,B55,B56,B57,B58,B59,B61,B68,B70,B71,B74,B76,B78,B79,B80,B81,B84,B85,B87,B89,B92,B96,B99,C13,C18,C2,C23,C28,C31,C38,C4,C41,C46,C55,C57,C61,C64,C66,C72,C73,C76,C80,C81,C83,D2,D3,D6,D9 |
Chr8:462139 |
TA |
* |
1bp_deletion | CDS_variant | 4 | A11,B119,B41,B98 |
Chr8:462144 |
GC |
* |
1bp_deletion | CDS_variant | 4 | A11,B119,B41,B98 |
Chr8:462154 |
G |
GAA |
2bp_insertion | frameshift_variant | 12 | B23,B44,B53,B79,C14,C32,C45,C48,C50,C68,C78,D3 |
Chr8:462204 |
C |
CT |
1bp_insertion | frameshift_variant | 4 | B61,B8,C4,C72 |
Chr8:462204 |
C |
CT |
1bp_insertion | CDS_variant | 4 | B61,B8,C4,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778257.1PF18052
Rx_N 5-80 aa
PF00067
p450 87-145 aa
PF00067
p450 147-175 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778257.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 80 | 1e-18 | 67.9 | Rx N-terminal domain |
XP_057778257.1 |
Pfam | PF00067 |
p450 | Domain | 87 | 145 | 1.4e-21 | 77.5 | Cytochrome P450 |
XP_057778257.1 |
Pfam | PF00067 |
p450 | Domain | 147 | 175 | 1.4e-21 | 77.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。