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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000119

染色体: Chr08 坐标: 737761-745061 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000119
名称SmilChr08G000119
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向737761 - 745061 / +

ID 对照

NCBI Gene IDLOC130996999
GeneID130996999
locus_tag-
NCBI NameLOC130996999
原始查询LOC130996999

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like
产物pentatricopeptide repeat-containing protein At1g12775%2C mitochondrial-like
ArabidopsisAT1G12700 (RPF1)
RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825]
identity=34.3; qcov=0.478; evalue=3.72e-110; confidence=low
RiceOs02g0824000
-
identity=26.1; qcov=0.744; evalue=9.59e-92; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:130996999

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.60000 XP_057778263.1
2 Mitochondrion membrane 线粒体膜 0.20000 XP_057778263.1
3 Endoplasmic reticulum 内质网 0.20000 XP_057778263.1
4 Chloroplast 叶绿体 0.20000 XP_057778263.1
5 Nucleus 细胞核 0.00000 XP_057778263.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:738942 G A EMS_canonical_SNV CDS_variant 5 B131,B35,B66,D11,D2
Chr8:738950 C T EMS_canonical_SNV CDS_variant 1 B13
Chr8:739060 TAA T 2bp_deletion frameshift_variant 3 C45,C63,C70
Chr8:739060 TAA T 2bp_deletion CDS_variant 3 C45,C63,C70
Chr8:739067 C T EMS_canonical_SNV CDS_variant 3 C45,C63,C70
Chr8:739071 C T EMS_canonical_SNV CDS_variant 1 B44
Chr8:739104 C T EMS_canonical_SNV CDS_variant 1 C87
Chr8:739238 C T EMS_canonical_SNV CDS_variant 2 C11,C69
Chr8:739274 C T EMS_canonical_SNV CDS_variant 5 A22,B102,B98,C2,C60
Chr8:739300 C CGT 2bp_insertion stop_gained,frameshift_variant 23 A14,A16,A22,B102,B12,B135,B2,B37,B60,B67,B75,B98,C2,C3,C43,C56,C59,C6,C60,C64,C8,D1,D4
Chr8:739327 TG T 1bp_deletion frameshift_variant 1 D10
Chr8:739327 TG T 1bp_deletion CDS_variant 1 D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778263.1
1115 aa
N
1
558
1115
PPR
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_2
TPR_24
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_24
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
C
PF01535 PPR 78-107 aa PF13041 PPR_2 181-229 aa PF01535 PPR 188-213 aa PF13812 PPR_3 206-262 aa PF12854 PPR_1 211-242 aa PF13041 PPR_2 216-264 aa PF01535 PPR 219-246 aa PF12854 PPR_1 247-278 aa PF13041 PPR_2 250-298 aa PF01535 PPR 253-282 aa PF13812 PPR_3 273-332 aa PF12854 PPR_1 282-313 aa PF01535 PPR 288-318 aa PF13041 PPR_2 293-334 aa PF12854 PPR_1 316-345 aa PF13041 PPR_2 320-369 aa PF01535 PPR 323-353 aa PF17177 PPR_long 337-460 aa PF13812 PPR_3 345-400 aa PF12854 PPR_1 351-384 aa PF01535 PPR 359-385 aa PF13041 PPR_2 359-404 aa PF12854 PPR_1 388-416 aa PF13041 PPR_2 390-439 aa PF01535 PPR 394-423 aa PF13812 PPR_3 413-470 aa PF12854 PPR_1 421-452 aa PF13041 PPR_2 425-462 aa PF01535 PPR 428-458 aa PF23276 TPR_24 439-533 aa PF13812 PPR_3 449-505 aa PF12854 PPR_1 456-489 aa PF13041 PPR_2 460-508 aa PF01535 PPR 464-493 aa PF13812 PPR_3 485-527 aa PF12854 PPR_1 491-524 aa PF13041 PPR_2 495-536 aa PF01535 PPR 498-528 aa PF01535 PPR 663-692 aa PF13041 PPR_2 765-814 aa PF23276 TPR_24 770-843 aa PF01535 PPR 773-798 aa PF13812 PPR_3 791-845 aa PF12854 PPR_1 796-828 aa PF13041 PPR_2 801-848 aa PF01535 PPR 804-832 aa PF12854 PPR_1 832-863 aa PF01535 PPR 838-868 aa PF13041 PPR_2 844-884 aa PF13812 PPR_3 859-914 aa PF12854 PPR_1 866-895 aa PF13041 PPR_2 870-919 aa PF01535 PPR 873-903 aa PF17177 PPR_long 884-1010 aa PF12854 PPR_1 901-934 aa PF13041 PPR_2 906-954 aa PF01535 PPR 909-935 aa PF13812 PPR_3 928-985 aa PF12854 PPR_1 938-966 aa PF13041 PPR_2 940-989 aa PF01535 PPR 945-973 aa PF12854 PPR_1 971-1002 aa PF13041 PPR_2 975-1024 aa PF01535 PPR 978-1008 aa PF23276 TPR_24 989-1083 aa PF13812 PPR_3 999-1055 aa PF12854 PPR_1 1006-1039 aa PF13041 PPR_2 1010-1058 aa PF01535 PPR 1014-1043 aa PF12854 PPR_1 1042-1074 aa PF13041 PPR_2 1045-1086 aa PF01535 PPR 1048-1078 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057778263.1 Pfam PF01535 PPR Repeat 78 107 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 181 229 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 188 213 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 206 262 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 211 242 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 216 264 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 219 246 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 247 278 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 250 298 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 253 282 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 273 332 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 282 313 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF01535 PPR Repeat 288 318 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 293 334 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 316 345 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 320 369 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 323 353 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF17177 PPR_long Repeat 337 460 2.4e-41 142.2 Pentacotripeptide-repeat region of PRORP
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 345 400 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 351 384 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF01535 PPR Repeat 359 385 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 359 404 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 388 416 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 390 439 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 394 423 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 413 470 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 421 452 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 425 462 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 428 458 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF23276 TPR_24 Repeat 439 533 1.4e-63 213.5 Pentatricopeptide repeat-containing protein
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 449 505 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 456 489 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 460 508 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 464 493 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 485 527 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 491 524 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 495 536 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 498 528 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF01535 PPR Repeat 663 692 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 765 814 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF23276 TPR_24 Repeat 770 843 1.4e-63 213.5 Pentatricopeptide repeat-containing protein
XP_057778263.1 Pfam PF01535 PPR Repeat 773 798 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 791 845 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 796 828 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 801 848 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 804 832 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 832 863 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF01535 PPR Repeat 838 868 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 844 884 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 859 914 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 866 895 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 870 919 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 873 903 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF17177 PPR_long Repeat 884 1010 2.4e-41 142.2 Pentacotripeptide-repeat region of PRORP
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 901 934 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 906 954 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 909 935 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 928 985 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 938 966 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 940 989 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 945 973 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 971 1002 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 975 1024 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 978 1008 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF23276 TPR_24 Repeat 989 1083 1.4e-63 213.5 Pentatricopeptide repeat-containing protein
XP_057778263.1 Pfam PF13812 PPR_3 Repeat 999 1055 4.5e-98 322.1 Pentatricopeptide repeat domain
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 1006 1039 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 1010 1058 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 1014 1043 9.2e-150 477.6 PPR repeat
XP_057778263.1 Pfam PF12854 PPR_1 Repeat 1042 1074 5.7e-199 644.1 PPR repeat
XP_057778263.1 Pfam PF13041 PPR_2 Repeat 1045 1086 3.6e-248 802.5 PPR repeat family
XP_057778263.1 Pfam PF01535 PPR Repeat 1048 1078 9.2e-150 477.6 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057922280.1
AAACAAGATTGAAGCAGTGAACTCCTGATGTTTGGAATTTGGAAGATGCCTTTAGGCTCTTCATATTTGAAGCCGCTGCAGATTTCTCTTCGTTGCTTCAACCAACAAAAGAGATCTAATCTCGCAGTCGCCGCCCAACACTCTCCCTTTCTTCACTTGAAAATCTCACCTCCGATTAAGAATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTTAATCGATGGTCGCATAAAT...

CDS

1 records

下载 CDS FASTA
LOC130996999
ATGATGAGCAGAAGAGCTGCTGTTTCTGCAATCGATCTCATTCATGGAAGAGGATTTCTTAATCGATGGTCGCATAAATCGGGTATTCTCTCTCCTCCATTCTCTCTCTTCTCTTCCAAGGCTTTTCAACCTAAGCAGCCCAGAATCGATTTCAGCTGTGTTAAAGAGTTAAATGATGCCATTGAATTGTTTCAAACAATAAAGAGCATGCGGCCAGAGCCTTCTCTTCTCGTGTTCAATAAACTTATGAGTGTTAGTGT...

Protein

1 records

下载 Protein FASTA
XP_057778263.1
MMSRRAAVSAIDLIHGRGFLNRWSHKSGILSPPFSLFSSKAFQPKQPRIDFSCVKELNDAIELFQTIKSMRPEPSLLVFNKLMSVSVKIEQYSFALDVFDEMLGMGVPVNDYTMNIAVNCCCLLKDMYSGFSIMGFFFKISYEPDVTTIGTLIKGLFLVEKEAEAVKLFEKVLDLKLCVPNKVMILHVIDGLCKSGQVVAAHDWLHRLESNGCRADVWSYNALIDGFCKEGKMEEVGKILETMTQQNMCPDIVTFSILVD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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