当前解析结果
SmilChr08G000163| 统一新 Gene ID | SmilChr08G000163 |
|---|---|
| 名称 | SmilChr08G000163 |
| 描述 | disease resistance protein RPS2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 1097351 - 1100629 / - |
| NCBI Gene ID | LOC130997017 |
|---|---|
| GeneID | 130997017 |
| locus_tag | - |
| NCBI Name | LOC130997017 |
| 原始查询 | LOC130997017 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | disease resistance protein RPS2-like |
| 产物 | disease resistance protein RPS2-like |
| Arabidopsis | AT4G26090 (RPS2)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:828715] identity=27.3; qcov=0.778; evalue=6.47e-58; confidence=low |
| Rice | Os04g0470500- identity=26.2; qcov=0.791; evalue=1.14e-45; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding) |
| KEGG | smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997017 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778278.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057778278.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057778278.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778278.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778278.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:1097996 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:1098028 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:1098122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr8:1098126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C35,C76 |
Chr8:1098128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr8:1098147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B38,B39,C11,C35,C76 |
Chr8:1098188 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:1098191 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr8:1098243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B111,B131,C20,C35 |
Chr8:1098251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B111,B131 |
Chr8:1098659 |
T |
TAA |
2bp_insertion | frameshift_variant | 1 | B5 |
Chr8:1098659 |
T |
TAA |
2bp_insertion | CDS_variant | 1 | B5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778278.1PF00931
NB-ARC 171-335 aa
PF23559
WHD_DRP 424-484 aa
PF13855
LRR_8 558-601 aa
PF23598
LRR_14 566-722 aa
PF23247
LRR_RPS2 814-911 aa
PF23247
LRR_RPS2 869-974 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778278.1 |
Pfam | PF00931 |
NB-ARC | Domain | 171 | 335 | 1.1e-14 | 55.1 | NB-ARC domain |
XP_057778278.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 424 | 484 | 2.1e-08 | 34.8 | Disease resistance protein Winged helix domain |
XP_057778278.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 558 | 601 | 1.4e-09 | 38.2 | Leucine rich repeat |
XP_057778278.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 566 | 722 | 7.4e-14 | 52.0 | Leucine-rich repeat region |
XP_057778278.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 814 | 911 | 9.6e-28 | 97.9 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057778278.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 869 | 974 | 9.6e-28 | 97.9 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。