Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000271`

染色体: Chr08 坐标: 1852901-1855957 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000271`
名称	SmilChr08G000271
描述	putative disease resistance protein RGA4
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1852901 - 1855957 / `+`

ID 对照

NCBI Gene ID	`LOC130997050`
GeneID	`130997050`
locus_tag	`-`
NCBI Name	`LOC130997050`
原始查询	`LOC130997050`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative disease resistance protein RGA4
产物	putative disease resistance protein RGA4
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.7; qcov=0.935; evalue=1.08e-119; confidence=low
Rice	`Os05g0492200` (YR1) - identity=33.8; qcov=0.932; evalue=1.04e-131; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:130997050

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057778312.1`
2	Cytosol	细胞质基质	0.20000	`XP_057778312.1`
3	Nucleus	细胞核	0.00000	`XP_057778312.1`
4	Chromosome	染色体	0.00000	`XP_057778312.1`
5	Centromere	着丝粒	0.00000	`XP_057778312.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1853007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,D11
`Chr8:1853091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B95,C40,C77
`Chr8:1853113`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A7,B124,B68,C54
`Chr8:1853116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:1853117`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C36
`Chr8:1853124`	`A`	`ATG`	2bp_insertion	frameshift_variant	39	A1,A13,A14,A18,A5,B1,B115,B12,B123,B129,B15,B29,B33,B39,B40,B43,B45,B51,B59,B6,B60,B65,B67,B7,B71,B72,B77,B79,B93,B94,C16,C20,C30,C32,C5,C64,C66,C68,D3
`Chr8:1853149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C8
`Chr8:1853186`	`GA`	`G`	1bp_deletion	frameshift_variant	132	A1,A10,A11,A13,A14,A15,A16,A19,A20,A24,A7,B1,B10,B100,B101,B102,B109,B112,B113,B115,B117,B119,B12,B122,B123,B125,B126,B127,B128,B131,B133,B134,B135,B138,B139,B140,B15,B16,B17,B19,B22,B26,B27,B28,B29,B30,B31,B32,B33,B34,B37,B43,B47,B5,B53,B54,B55,B56,B58,B6,B64,B65,B66,B67,B68,B69,B73,B75,B77,B78,B8,B80,B82,B83,B84,B88,B9,B92,B93,B94,B95,B96,B99,C13,C16,C17,C19,C22,C24,C25,C26,C28,C29,C3,C30,C33,C35,C36,C38,C43,C45,C46,C47,C49,C50,C51,C52,C54,C56,C57,C58,C59,C61,C65,C66,C70,C72,C74,C76,C77,C78,C8,C80,C82,C83,C86,C87,D1,D11,D7,D8,D9
`Chr8:1853190`	`TGA`	`T`	2bp_deletion	frameshift_variant	132	A1,A10,A11,A13,A14,A15,A16,A19,A20,A24,A7,B1,B10,B100,B101,B102,B109,B112,B113,B115,B117,B119,B12,B122,B123,B125,B126,B127,B128,B131,B133,B134,B135,B138,B139,B140,B15,B16,B17,B19,B22,B26,B27,B28,B29,B30,B31,B32,B33,B34,B37,B43,B47,B5,B53,B54,B55,B56,B58,B6,B64,B65,B66,B67,B68,B69,B73,B75,B77,B78,B8,B80,B82,B83,B84,B88,B9,B92,B93,B94,B95,B96,B99,C13,C16,C17,C19,C22,C24,C25,C26,C28,C29,C3,C30,C33,C35,C36,C43,C45,C46,C47,C49,C50,C51,C52,C54,C56,C57,C58,C59,C61,C65,C66,C70,C72,C74,C76,C77,C78,C8,C80,C82,C83,C86,C87,C9,D1,D11,D7,D8,D9
`Chr8:1853203`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A3,B85,B98,C16,D7
`Chr8:1853230`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C2
`Chr8:1853230`	`CT`	`C`	1bp_deletion	CDS_variant	1	C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778312.1

1018 aa

509

1018

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

LRR_RPS2

PF18052 Rx_N 10-95 aa PF00931 NB-ARC 178-345 aa PF13401 AAA_22 194-281 aa PF23559 WHD_DRP 429-500 aa PF23598 LRR_14 540-836 aa PF25019 LRR_R13L1-DRL21 670-804 aa PF23247 LRR_RPS2 770-887 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778312.1`	Pfam	`PF18052`	Rx_N	Domain	10	95	8e-20	71.5	Rx N-terminal domain
`XP_057778312.1`	Pfam	`PF00931`	NB-ARC	Domain	178	345	1.5e-36	126.3	NB-ARC domain
`XP_057778312.1`	Pfam	`PF13401`	AAA_22	Domain	194	281	1.1e-06	29.7	AAA domain
`XP_057778312.1`	Pfam	`PF23559`	WHD_DRP	Domain	429	500	1.6e-24	86.4	Disease resistance protein Winged helix domain
`XP_057778312.1`	Pfam	`PF23598`	LRR_14	Repeat	540	836	8.5e-32	111.0	Leucine-rich repeat region
`XP_057778312.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	670	804	1.8e-37	128.8	R13L1/DRL21 LRRs
`XP_057778312.1`	Pfam	`PF23247`	LRR_RPS2	Repeat	770	887	3.8e-09	37.4	Plant disease resistance protein RPS2-like, leucine-rich repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922329.1
ATGGATGCGAAAACTGCTGCCTCCGTCCTTCAAGCTCCAATTCAAAGCCTCATCGACTTTTGCAAGAAAGAGTTCTCTCAAATCCGAGGTCTCAACAAAGAAGCAGCAAAGCTAGCTGCGAGTCTCGACACCATCCAGAAATTCTTGAACGACGCGGAGGCGCGAACCATCCCCGGCGATGCCGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCGACTCCGACAACGTTTTGGATGAGCTCAACTATCATCT...

CDS

1 records

下载 CDS FASTA

LOC130997050
ATGGATGCGAAAACTGCTGCCTCCGTCCTTCAAGCTCCAATTCAAAGCCTCATCGACTTTTGCAAGAAAGAGTTCTCTCAAATCCGAGGTCTCAACAAAGAAGCAGCAAAGCTAGCTGCGAGTCTCGACACCATCCAGAAATTCTTGAACGACGCGGAGGCGCGAACCATCCCCGGCGATGCCGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCGACTCCGACAACGTTTTGGATGAGCTCAACTATCATCT...

Protein

1 records

下载 Protein FASTA

XP_057778312.1
MDAKTAASVLQAPIQSLIDFCKKEFSQIRGLNKEAAKLAASLDTIQKFLNDAEARTIPGDAVKSWLKKLEDVAFDSDNVLDELNYHLLSKQIEHTEMTMMEKVLSCCSSSFNSIARTRNMALKIKEINENLESINKEATDLGLVGRLADQPALDIATLETNSYTHDPIFIGRDDVVKEIVEKLTKSITTDERVSIISIVGMGGLGKTTLTRKVFNRMKDENRFGSHIWVHVSSNFDALTLFKKILKELTRDQVEGESQQE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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