当前解析结果
SmilChr08G000371| 统一新 Gene ID | SmilChr08G000371 |
|---|---|
| 名称 | SmilChr08G000371 |
| 描述 | uncharacterized SmilChr08G000371 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 2556826 - 2558542 / + |
| NCBI Gene ID | LOC130997062 |
|---|---|
| GeneID | 130997062 |
| locus_tag | - |
| NCBI Name | LOC130997062 |
| 原始查询 | LOC130997062 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | evolutionarily conserved C-terminal region 4 [Source:NCBI gene (formerly Entrezgene);Acc:841997]; symbol=ECT4; hit=AT1G55500; species=arabidopsis; confidence=weak |
| 产物 | evolutionarily conserved C-terminal region 4 [Source:NCBI gene (formerly Entrezgene);Acc:841997]; symbol=ECT4; hit=AT1G55500; species=arabidopsis; confidence=weak |
| Arabidopsis | AT1G55500 (ECT4)evolutionarily conserved C-terminal region 4 [Source:NCBI gene (formerly Entrezgene);Acc:841997] identity=61; qcov=0.118; evalue=1.45e-16; confidence=weak |
| Rice | Os03g0748000- identity=59.3; qcov=0.118; evalue=2.58e-15; confidence=weak |
| GO | GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0061157 (mRNA destabilization) |
| KEGG | - |
| Pfam | PF03478 (Beta-prop_KIB1-4); PF04146 (YTH); PF07734 (FBA_1); PF08268 (FBA_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997062 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778322.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057778322.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778322.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778322.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778322.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:2556899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B123,B18,B90,B99,C54 |
Chr8:2556926 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:2556940 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:2557121 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B35,B53,C28 |
Chr8:2557193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:2557197 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:2557199 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B5,B92,C49,C54 |
Chr8:2557354 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | C2,C24,C41 |
Chr8:2557354 |
T |
TG |
1bp_insertion | CDS_variant | 3 | C2,C24,C41 |
Chr8:2557371 |
TTA |
T |
2bp_deletion | frameshift_variant | 1 | B37 |
Chr8:2557371 |
TTA |
T |
2bp_deletion | CDS_variant | 1 | B37 |
Chr8:2557435 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778322.1PF08268
FBA_3 23-201 aa
PF03478
Beta-prop_KIB1-4 34-213 aa
PF07734
FBA_1 45-207 aa
PF04146
YTH 439-495 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778322.1 |
Pfam | PF08268 |
FBA_3 | Repeat | 23 | 201 | 4.2e-14 | 53.0 | F-box associated beta propeller domain |
XP_057778322.1 |
Pfam | PF03478 |
Beta-prop_KIB1-4 | Repeat | 34 | 213 | 2.4e-09 | 37.8 | KIB1-4 beta-propeller |
XP_057778322.1 |
Pfam | PF07734 |
FBA_1 | Repeat | 45 | 207 | 3.6e-21 | 76.2 | F-box associated beta propeller domain |
XP_057778322.1 |
Pfam | PF04146 |
YTH | Domain | 439 | 495 | 1.3e-10 | 41.8 | YT521-B-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。