当前解析结果
SmilChr08G003697| 统一新 Gene ID | SmilChr08G003697 |
|---|---|
| 名称 | SmilChr08G003697 |
| 描述 | glycine-rich RNA-binding protein 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 41386480 - 41387188 / + |
| NCBI Gene ID | LOC130997079 |
|---|---|
| GeneID | 130997079 |
| locus_tag | - |
| NCBI Name | LOC130997079 |
| 原始查询 | LOC130997079 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glycine-rich RNA-binding protein 2-like |
| 产物 | glycine-rich RNA-binding protein 2-like |
| Arabidopsis | AT4G39260 (CCR1)cold, circadian rhythm, and RNA binding 1 [Source:NCBI gene (formerly Entrezgene);Acc:830082] identity=75.8; qcov=0.292; evalue=3.96e-08; confidence=weak |
| Rice | Os12g0632000 (GRP162)- identity=88; qcov=0.221; evalue=6.17e-08; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997079 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778338.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057778338.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057778338.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778338.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778338.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:41386880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,A5,B5 |
Chr8:41386904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B79,C15 |
Chr8:41386921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A7,B93,C20 |
Chr8:41386975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,B136,B48 |
Chr8:41386989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B90,B92,C53 |
Chr8:41387003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B57,D3 |
Chr8:41387089 |
T |
TG |
1bp_insertion | frameshift_variant | 18 | B1,B100,B106,B114,B13,B30,B35,B64,B8,B83,C21,C31,C38,C44,C56,C70,C76,D11 |
Chr8:41387116 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C74 |
Chr8:41387152 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B20 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。