当前解析结果
SmilChr08G003711| 统一新 Gene ID | SmilChr08G003711 |
|---|---|
| 名称 | SmilChr08G003711 |
| 描述 | protein STICHEL-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 41698522 - 41705140 / + |
| NCBI Gene ID | LOC130997090 |
|---|---|
| GeneID | 130997090 |
| locus_tag | - |
| NCBI Name | LOC130997090 |
| 原始查询 | LOC130997090 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein STICHEL-like |
| 产物 | protein STICHEL-like |
| Arabidopsis | AT2G02480 (STI)AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:814777] identity=49.6; qcov=1.03; evalue=0; confidence=high |
| Rice | Os12g0209300- identity=39.2; qcov=1.04; evalue=0; confidence=medium |
| GO | GO:0003689 (DNA clamp loader activity); GO:0003887 (DNA-directed DNA polymerase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0009360 (DNA polymerase III complex) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF12169 (DNA_pol3_gamma3); PF13177 (DNA_pol3_delta2); PF22608 (DNAX_ATPase_lid); PF23007 (DnaA_N-like_STI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997090 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057778344.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057778344.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778344.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778344.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778344.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:41699410 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,B82,C79 |
Chr8:41699411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,B85 |
Chr8:41699631 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:41700244 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:41700262 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr8:41700310 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:41700453 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B98,C18 |
Chr8:41700572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,C18,C22 |
Chr8:41702938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B97,C26 |
Chr8:41704156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B132 |
Chr8:41704923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:41704935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B32,C34,C57,C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778344.1PF13177
DNA_pol3_delta2 510-668 aa
PF00004
AAA 531-666 aa
PF22608
DNAX_ATPase_lid 674-715 aa
PF12169
DNA_pol3_gamma3 723-793 aa
PF23007
DnaA_N-like_STI 945-1028 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778344.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 510 | 668 | 1.2e-25 | 91.1 | DNA polymerase III, delta subunit |
XP_057778344.1 |
Pfam | PF00004 |
AAA | Domain | 531 | 666 | 2.1e-06 | 28.9 | ATPase family associated with various cellular activities (AAA) |
XP_057778344.1 |
Pfam | PF22608 |
DNAX_ATPase_lid | Domain | 674 | 715 | 3.9e-10 | 40.1 | DNA polymerase III clamp loader subunit, ATPase lid domain |
XP_057778344.1 |
Pfam | PF12169 |
DNA_pol3_gamma3 | Family | 723 | 793 | 6.3e-08 | 33.2 | DNA polymerase III subunits gamma and tau domain III |
XP_057778344.1 |
Pfam | PF23007 |
DnaA_N-like_STI | Domain | 945 | 1028 | 2.2e-27 | 95.7 | STICHEL, DnaA_N-like alpha-beta domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。