Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003752`

染色体: Chr08 坐标: 42596308-42601898 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003752`
名称	SmilChr08G003752
描述	sucrose-phosphatase 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	42596308 - 42601898 / `+`

ID 对照

NCBI Gene ID	`LOC130997120`
GeneID	`130997120`
locus_tag	`-`
NCBI Name	`LOC130997120`
原始查询	`LOC130997120`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sucrose-phosphatase 1-like
产物	sucrose-phosphatase 1-like
Arabidopsis	`AT2G35840` (AT2G35840) Sucrose-6F-phosphate phosphohydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818157] identity=65; qcov=0.952; evalue=0; confidence=high
Rice	`Os01g0376700` - identity=60.5; qcov=0.949; evalue=1.85e-177; confidence=high
GO	GO:0000287 (magnesium ion binding); GO:0005986 (sucrose biosynthetic process); GO:0050307 (sucrose-phosphate phosphatase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF05116 (S6PP); PF08282 (Hydrolase_3); PF08472 (S6PP_C)
InterPro	-
eggNOG	-
NR	GeneID:130997120

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057778366.1`
2	Cytosol	细胞质基质	0.60000	`XP_057778365.1`
3	Nucleus	细胞核	0.00000	`XP_057778365.1`
4	Chromosome	染色体	0.00000	`XP_057778365.1`
5	Centromere	着丝粒	0.00000	`XP_057778365.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:42597399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B128,B17,C58,D1
`Chr8:42597747`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	A18,B24,C65
`Chr8:42597747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B24,C65
`Chr8:42597963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:42598556`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B61,C22
`Chr8:42601559`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B49
`Chr8:42601560`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B129,B74,B95

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778365.1

469 aa

234

469

S6PP

Hydrolase_3

S6PP_C

PF05116 S6PP 55-306 aa PF08282 Hydrolase_3 152-276 aa PF08472 S6PP_C 329-458 aa

XP_057778366.1

435 aa

218

435

S6PP

Hydrolase_3

S6PP

S6PP_C

PF05116 S6PP 55-166 aa PF08282 Hydrolase_3 159-242 aa PF05116 S6PP 166-272 aa PF08472 S6PP_C 295-424 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778365.1`	Pfam	`PF05116`	S6PP	Family	55	306	9.1e-98	327.5	Sucrose-6F-phosphate phosphohydrolase
`XP_057778365.1`	Pfam	`PF08282`	Hydrolase_3	Domain	152	276	3.6e-12	47.3	haloacid dehalogenase-like hydrolase
`XP_057778365.1`	Pfam	`PF08472`	S6PP_C	Domain	329	458	3.5e-57	192.6	Sucrose-6-phosphate phosphohydrolase C-terminal
`XP_057778366.1`	Pfam	`PF05116`	S6PP	Family	55	166	1e-78	265.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057778366.1`	Pfam	`PF08282`	Hydrolase_3	Domain	159	242	1.1e-09	39.2	haloacid dehalogenase-like hydrolase
`XP_057778366.1`	Pfam	`PF05116`	S6PP	Family	166	272	1e-78	265.1	Sucrose-6F-phosphate phosphohydrolase
`XP_057778366.1`	Pfam	`PF08472`	S6PP_C	Domain	295	424	2.5e-57	193.1	Sucrose-6-phosphate phosphohydrolase C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922382.1
AGTTTTCTTTACTCATTTCTTTGTTTCTTGTTTTGCGCCTCATCAAAAAATAGAGAAAAAGGAAAATTATCCAACTGCCAAACCGAAATCGCAAGGCCCAGATCCAATTTAGCGGTTCCATGCTACCATCTCTCACGCTGCAATTTCTATGCTATTCTTCACCTTTCCAACGCACTCATTGTCTCTCCACCACCACCACCACCACCTCCGCCACCTCTGCTGCTGTTTGTCAGAGTGAATCTAGTCTAAGAAAAACAATG...

XM_057922383.1
TTACTCATTTCTTTGTTTCTTGTTTTGCGCCTCATCAAAAAATAGAGAAAAAGGAAAATTATCCAACTGCCAAACCGAAATCGCAAGGCCCAGATCCAATTTAGCGGTTCCATGCTACCATCTCTCACGCTGCAATTTCTATGCTATTCTTCACCTTTCCAACGCACTCATTGTCTCTCCACCACCACCACCACCACCTCCGCCACCTCTGCTGCTGTTTGTCAGAGTGAATCTAGTCTAAGAAAAACAATGGATCGTCT...

CDS

2 records

下载 CDS FASTA

LOC130997120
ATGCTACCATCTCTCACGCTGCAATTTCTATGCTATTCTTCACCTTTCCAACGCACTCATTGTCTCTCCACCACCACCACCACCACCTCCGCCACCTCTGCTGCTGTTTGTCAGAGTGAATCTAGTCTAAGAAAAACAATGGATCGTCTAACTGAGAATGCACGCCTCATGATTGTCTCTGATCTTGATCATACAATGGTTGATCATCATGATCCTGAGAATCTCTCCCTGCTTAGATTCAATGCCTTGTGGGAAGCAAA...

Protein

2 records

下载 Protein FASTA

XP_057778365.1
MLPSLTLQFLCYSSPFQRTHCLSTTTTTTSATSAAVCQSESSLRKTMDRLTENARLMIVSDLDHTMVDHHDPENLSLLRFNALWEANYRSNSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNSMEPDNGWLDFLNQKWDRNIVSEETSKITELTLQSETEQRPHKLSFYVQKDKAEDIMRSLSSCLKERGLDVKIIYSGGMDLDILPQGAGKGQALAYLHEKFKAEGKLPKNTLVCGDSGNDAELFTIPD...

XP_057778366.1
MLPSLTLQFLCYSSPFQRTHCLSTTTTTTSATSAAVCQSESSLRKTMDRLTENARLMIVSDLDHTMVDHHDPENLSLLRFNALWEANYRSNSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNSMEPDNGWLDFLNQKWDRNIVSEETSKITELTLQLDVKIIYSGGMDLDILPQGAGKGQALAYLHEKFKAEGKLPKNTLVCGDSGNDAELFTIPDVHGVMVSNAMEELLQWHAIYAKNNPKIIHAKERC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器