当前解析结果
SmilChr08G000466| 统一新 Gene ID | SmilChr08G000466 |
|---|---|
| 名称 | SmilChr08G000466 |
| 描述 | proline-rich receptor-like protein kinase PERK10 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3323924 - 3324424 / - |
| NCBI Gene ID | LOC130997138 |
|---|---|
| GeneID | 130997138 |
| locus_tag | - |
| NCBI Name | LOC130997138 |
| 原始查询 | LOC130997138 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proline-rich receptor-like protein kinase PERK10 |
| 产物 | proline-rich receptor-like protein kinase PERK10 |
| Arabidopsis | AT3G45230 (AT3G45230)hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:823659] identity=65.9; qcov=0.265; evalue=6.63e-12; confidence=weak |
| Rice | Os03g0852400 (OsAGP31)- identity=43.8; qcov=0.482; evalue=3.59e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997138 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778381.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778381.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778381.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778381.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778381.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3323943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:3323945 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B35,B38,B39 |
Chr8:3323948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B8,C17 |
Chr8:3324007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B65,B77,C64,C66,C85 |
Chr8:3324047 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,B40,B61 |
Chr8:3324077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:3324105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:3324146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A13,B110,C27 |
Chr8:3324159 |
GGA |
G |
2bp_deletion | frameshift_variant | 2 | B23,B40 |
Chr8:3324159 |
GGA |
G |
2bp_deletion | CDS_variant | 2 | B23,B40 |
Chr8:3324233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B25,C63,C83 |
Chr8:3324260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,A19,B108 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。