Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000570`

染色体: Chr08 坐标: 4132359-4133865 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000570`
名称	SmilChr08G000570
描述	uncharacterized SmilChr08G000570
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4132359 - 4133865 / `+`

ID 对照

NCBI Gene ID	`LOC130997146`
GeneID	`130997146`
locus_tag	`-`
NCBI Name	`LOC130997146`
原始查询	`LOC130997146`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	prenylated RAB acceptor 1.E [Source:NCBI gene (formerly Entrezgene);Acc:837399]; symbol=PRA1.E; hit=AT1G08770; species=arabidopsis; confidence=low
产物	prenylated RAB acceptor 1.E [Source:NCBI gene (formerly Entrezgene);Acc:837399]; symbol=PRA1.E; hit=AT1G08770; species=arabidopsis; confidence=low
Arabidopsis	`AT1G08770` (PRA1.E) prenylated RAB acceptor 1.E [Source:NCBI gene (formerly Entrezgene);Acc:837399] identity=57.3; qcov=0.338; evalue=4e-13; confidence=low
Rice	`Os03g0741600` - identity=42.5; qcov=0.329; evalue=2.28e-11; confidence=low
GO	GO:0005783 (endoplasmic reticulum); GO:0005794 (Golgi apparatus); GO:0016192 (vesicle-mediated transport)
KEGG	-
Pfam	PF03208 (PRA1)
InterPro	-
eggNOG	-
NR	GeneID:130997146

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057778388.1`
2	Cytoplasm	细胞质	0.60000	`XP_057778388.1`
3	Chromosome	染色体	0.00000	`XP_057778388.1`
4	Centromere	着丝粒	0.00000	`XP_057778388.1`
5	Chromatin	染色质	0.00000	`XP_057778388.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4132367`	`GA`	`G`	1bp_deletion	frameshift_variant	3	B34,B9,C72
`Chr8:4132367`	`GA`	`G`	1bp_deletion	CDS_variant	3	B34,B9,C72
`Chr8:4133239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,B62
`Chr8:4133241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr8:4133245`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr8:4133289`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	C75
`Chr8:4133289`	`ATC`	`A`	2bp_deletion	CDS_variant	1	C75
`Chr8:4133291`	`CT`	`C`	1bp_deletion	frameshift_variant	3	A2,B35,D11
`Chr8:4133291`	`CT`	`C`	1bp_deletion	CDS_variant	3	A2,B35,D11
`Chr8:4133303`	`CG`	`C`	1bp_deletion	frameshift_variant	3	A20,B79,C60
`Chr8:4133303`	`CG`	`C`	1bp_deletion	CDS_variant	3	A20,B79,C60
`Chr8:4133310`	`G`	`GA`	1bp_insertion	frameshift_variant	17	B123,B124,B135,B136,B14,B140,B21,B3,B36,C14,C24,C29,C33,C5,C58,C71,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778388.1

222 aa

111

222

PRA1

PF03208 PRA1 117-209 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778388.1`	Pfam	`PF03208`	PRA1	Family	117	209	1.6e-13	51.2	PRA1 family protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922405.1
ATGGGTAGGAAATCAGATTACAACGACTTTAAAACTAAAATACCCCTCCTTAAATATTTGCAATTTTCCAAAAATAATCCTCACTTTCTCTCATCTTTTTTTTTCCCGGTCCAGGCACCTCTCTCCTCTTTTCTCTCTCTCTCTCCCCTCTTTTCTCTCTCGCCTCCAATCCTTCCAAATTGGCTTTCTCCAGCAGCCTCAAGCTTAGAAGCGGAGCTCCGGCAGGCTTCCGACGGCCAACACCGCCGTGAAAGAAGGAG...

CDS

1 records

下载 CDS FASTA

LOC130997146
ATGGGTAGGAAATCAGATTACAACGACTTTAAAACTAAAATACCCCTCCTTAAATATTTGCAATTTTCCAAAAATAATCCTCACTTTCTCTCATCTTTTTTTTTCCCGGTCCAGGCACCTCTCTCCTCTTTTCTCTCTCTCTCTCCCCTCTTTTCTCTCTCGCCTCCAATCCTTCCAAATTGGCTTTCTCCAGCAGCCTCAAGCTTAGAAGCGGAGCTCCGGCAGGCTTCCGACGGCCAACACCGCCGTGAAAGAAGGAG...

Protein

1 records

下载 Protein FASTA

XP_057778388.1
MGRKSDYNDFKTKIPLLKYLQFSKNNPHFLSSFFFPVQAPLSSFLSLSPLFSLSPPILPNWLSPAASSLEAELRQASDGQHRRERRSDGQPCRVSSPAVAAALYQRRSDAAAAVLSLSLIADLSLSICSATAALDRRRSDAWFCCEDPVVILGRIVDDRVVLLSLGLVTVMALVFTHVGLNVLVALIVALVACGGHAAVRGTKDLFLDESDAAEGGLLSVVC

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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