Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002575`

染色体: Chr08 坐标: 25086785-25090408 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002575`
名称	SmilChr08G002575
描述	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25086785 - 25090408 / `+`

ID 对照

NCBI Gene ID	`LOC130997213`
GeneID	`130997213`
locus_tag	`-`
NCBI Name	`LOC130997213`
原始查询	`LOC130997213`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic
产物	glycerol-3-phosphate dehydrogenase [NAD(+)] 2%2C chloroplastic
Arabidopsis	`AT2G40690` (GLY1) NAD-dependent glycerol-3-phosphate dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818664] identity=85.8; qcov=0.969; evalue=0; confidence=high
Rice	`Os01g0971600` (OsSTA45) - identity=32.2; qcov=0.905; evalue=9.61e-33; confidence=low
GO	GO:0005829 (cytosol); GO:0005975 (carbohydrate metabolic process); GO:0006116 (GO:0006116); GO:0009331 (glycerol-3-phosphate dehydrogenase (FAD) complex); GO:0046168 (glycerol-3-phosphate catabolic process); GO:0047952 (glycerol-3-phosphate dehydrogenase [NAD(P)+] activity); GO:0051287 (NAD binding)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01210 (NAD_Gly3P_dh_N); PF02558 (ApbA); PF07479 (NAD_Gly3P_dh_C); PF20618 (GPD_NAD_C_bact)
InterPro	-
eggNOG	-
NR	GeneID:130997213

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778444.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057778445.1`
3	Mitochondrion	线粒体	0.80000	`XP_057778447.1`
4	Cytoplasm	细胞质	0.60000	`XP_057778447.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057778447.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25086826`	`CTA`	`C`	2bp_deletion	frameshift_variant	14	B1,B101,B131,B2,B38,B66,B79,B98,C24,C50,C65,C7,C79,C87
`Chr8:25086829`	`TG`	`T`	1bp_deletion	frameshift_variant	4	A2,B104,B107,C46
`Chr8:25086829`	`TG`	`T`	1bp_deletion	CDS_variant	4	A2,B104,B107,C46
`Chr8:25086830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B58,B90,B92,C43
`Chr8:25086841`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C82
`Chr8:25086841`	`AG`	`A`	1bp_deletion	CDS_variant	1	C82
`Chr8:25086842`	`G`	`GA`	1bp_insertion	frameshift_variant	22	A2,B1,B101,B104,B107,B123,B131,B2,B38,B66,B79,B98,C13,C22,C24,C46,C50,C65,C7,C79,C87,D10
`Chr8:25086846`	`A`	`AAG`	2bp_insertion	frameshift_variant	2	B2,C87
`Chr8:25086846`	`A`	`AAG`	2bp_insertion	CDS_variant	2	B2,C87
`Chr8:25086929`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B107,C46
`Chr8:25087060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,C8
`Chr8:25087125`	`CT`	`C`	1bp_deletion	frameshift_variant	84	A1,A14,A16,A19,A21,A22,A25,A6,B100,B103,B104,B110,B114,B115,B121,B122,B123,B126,B130,B135,B137,B14,B20,B21,B27,B28,B3,B33,B35,B4,B42,B43,B46,B49,B5,B51,B52,B54,B56,B58,B59,B6,B62,B65,B69,B8,B82,B83,B84,B85,B86,B9,B96,C1,C10,C14,C15,C16,C18,C22,C25,C28,C36,C38,C4,C45,C47,C48,C5,C52,C54,C56,C6,C61,C62,C78,C80,C9,D1,D4,D5,D6,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778444.1

490 aa

245

490

NAD_Gly3P_dh_N

ApbA

NAD_Gly3P_dh_C

GPD_NAD_C_bact

PF01210 NAD_Gly3P_dh_N 152-312 aa PF02558 ApbA 153-260 aa PF07479 NAD_Gly3P_dh_C 331-471 aa PF20618 GPD_NAD_C_bact 391-457 aa

XP_057778445.1

483 aa

242

483

NAD_Gly3P_dh_N

ApbA

NAD_Gly3P_dh_C

GPD_NAD_C_bact

PF01210 NAD_Gly3P_dh_N 152-312 aa PF02558 ApbA 153-260 aa PF07479 NAD_Gly3P_dh_C 331-471 aa PF20618 GPD_NAD_C_bact 391-457 aa

XP_057778446.1

435 aa

218

435

NAD_Gly3P_dh_N

ApbA

NAD_Gly3P_dh_C

GPD_NAD_C_bact

PF01210 NAD_Gly3P_dh_N 152-312 aa PF02558 ApbA 153-260 aa PF07479 NAD_Gly3P_dh_C 331-429 aa PF20618 GPD_NAD_C_bact 391-427 aa

XP_057778447.1

326 aa

163

326

NAD_Gly3P_dh_N

NAD_Gly3P_dh_C

GPD_NAD_C_bact

PF01210 NAD_Gly3P_dh_N 4-148 aa PF07479 NAD_Gly3P_dh_C 167-307 aa PF20618 GPD_NAD_C_bact 227-293 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778444.1`	Pfam	`PF01210`	NAD_Gly3P_dh_N	Family	152	312	3.6e-41	141.5	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
`XP_057778444.1`	Pfam	`PF02558`	ApbA	Domain	153	260	3.7e-05	24.1	Ketopantoate reductase PanE/ApbA
`XP_057778444.1`	Pfam	`PF07479`	NAD_Gly3P_dh_C	Domain	331	471	1.3e-49	168.8	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
`XP_057778444.1`	Pfam	`PF20618`	GPD_NAD_C_bact	Domain	391	457	8.4e-21	75.0	Bacterial GPD, NAD-dependent C-terminal
`XP_057778445.1`	Pfam	`PF01210`	NAD_Gly3P_dh_N	Family	152	312	3.4e-41	141.6	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
`XP_057778445.1`	Pfam	`PF02558`	ApbA	Domain	153	260	3.6e-05	24.1	Ketopantoate reductase PanE/ApbA
`XP_057778445.1`	Pfam	`PF07479`	NAD_Gly3P_dh_C	Domain	331	471	1.3e-49	168.8	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
`XP_057778445.1`	Pfam	`PF20618`	GPD_NAD_C_bact	Domain	391	457	8.1e-21	75.1	Bacterial GPD, NAD-dependent C-terminal
`XP_057778446.1`	Pfam	`PF01210`	NAD_Gly3P_dh_N	Family	152	312	3e-41	141.7	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
`XP_057778446.1`	Pfam	`PF02558`	ApbA	Domain	153	260	4.1e-05	24.0	Ketopantoate reductase PanE/ApbA
`XP_057778446.1`	Pfam	`PF07479`	NAD_Gly3P_dh_C	Domain	331	429	6e-36	124.5	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
`XP_057778446.1`	Pfam	`PF20618`	GPD_NAD_C_bact	Domain	391	427	2.7e-11	44.6	Bacterial GPD, NAD-dependent C-terminal
`XP_057778447.1`	Pfam	`PF01210`	NAD_Gly3P_dh_N	Family	4	148	2.8e-33	115.8	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
`XP_057778447.1`	Pfam	`PF07479`	NAD_Gly3P_dh_C	Domain	167	307	6.4e-50	169.8	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
`XP_057778447.1`	Pfam	`PF20618`	GPD_NAD_C_bact	Domain	227	293	6.9e-21	75.3	Bacterial GPD, NAD-dependent C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057922462.1
AATATTGTGGGTGACTCGAGTTGCTTGGATCGAGTCAGCCACTATGATTGCTCTAAAGAAAAAAAGGGGTAAAAGAGAGGGGATTCCTCAGCGGCGGGCACGTGGAATACAGATATTGGTTAAAAGAAGCAACATTTGTTTTATCATTTTCCTTGAATCAGAAACAGAACAAAATCGCCGCGAATGGCTACTTCACTCTTTGAGCCGCCATTTTCACCCAACAATTCGCCCTTCTCTTTCAAACCCATTCCCAATAGCTA...

XM_057922461.1
ATTGTGGGTGACTCGAGTTGCTTGGATCGAGTCAGCCACTATGATTGCTCTAAAGAAAAAAAGGGGTAAAAGAGAGGGGATTCCTCAGCGGCGGGCACGTGGAATACAGATATTGGTTAAAAGAAGCAACATTTGTTTTATCATTTTCCTTGAATCAGAAACAGAACAAAATCGCCGCGAATGGCTACTTCACTCTTTGAGCCGCCATTTTCACCCAACAATTCGCCCTTCTCTTTCAAACCCATTCCCAATAGCTATTT...

CDS

4 records

下载 CDS FASTA

LOC130997213
ATGATTGCTCTAAAGAAAAAAAGGGGTAAAAGAGAGGGGATTCCTCAGCGGCGGGCACGTGGAATACAGATATTGGTTAAAAGAAGCAACATTTGTTTTATCATTTTCCTTGAATCAGAAACAGAACAAAATCGCCGCGAATGGCTACTTCACTCTTTGAGCCGCCATTTTCACCCAACAATTCGCCCTTCTCTTTCAAACCCATTCCCAATAGCTATTTTCTCCAACTTCCCCGCTCCCCCACCGCCGCACCTCCTATC...

Protein

4 records

下载 Protein FASTA

XP_057778444.1
MIALKKKRGKREGIPQRRARGIQILVKRSNICFIIFLESETEQNRREWLLHSLSRHFHPTIRPSLSNPFPIAIFSNFPAPPPPHLLSASAPPMNSSSCHLPSPPDASQEHSVSLERSRDRRKVVRVAWEKLLRWSRSLRSKAKTDVLERTKKVVVLGGGSFGTAMAAHVADRKAQLEVNMLVRDAEVCQSINESHLNCKYFPTHKLPENVVATTDAREALQGADFCFHAVPVQFSALFLEGVADFVDPSLPFISLSKGLE...

XP_057778445.1
MIALKKKRGKREGIPQRRARGIQILVKRSNICFIIFLESETEQNRREWLLHSLSRHFHPTIRPSLSNPFPIAIFSNFPAPPPPHLLSASAPPMNSSSCHLPSPPDASQEHSVSLERSRDRRKVVRVAWEKLLRWSRSLRSKAKTDVLERTKKVVVLGGGSFGTAMAAHVADRKAQLEVNMLVRDAEVCQSINESHLNCKYFPTHKLPENVVATTDAREALQGADFCFHAVPVQFSALFLEGVADFVDPSLPFISLSKGLE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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