Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002594`

染色体: Chr08 坐标: 25276958-25281071 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002594`
名称	SmilChr08G002594
描述	NF-X1-type zinc finger protein NFXL1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25276958 - 25281071 / `+`

ID 对照

NCBI Gene ID	`LOC130997232`
GeneID	`130997232`
locus_tag	`-`
NCBI Name	`LOC130997232`
原始查询	`LOC130997232`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NF-X1-type zinc finger protein NFXL1
产物	NF-X1-type zinc finger protein NFXL1
Arabidopsis	`AT1G10170` (NFXL1) NF-X-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:837555] identity=60.3; qcov=1.03; evalue=0; confidence=high
Rice	`Os06g0252300` - identity=60.4; qcov=0.784; evalue=0; confidence=high
GO	GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF01422 (zf-NF-X1); PF24435 (RRM_NFXL1)
InterPro	-
eggNOG	-
NR	GeneID:130997232

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057778475.1`
2	Cytoplasm	细胞质	0.80000	`XP_057778475.1`
3	Cytosol	细胞质基质	0.40000	`XP_057778475.1`
4	Chromosome	染色体	0.00000	`XP_057778475.1`
5	Centromere	着丝粒	0.00000	`XP_057778475.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25277450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr8:25277532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,B90,C43
`Chr8:25277548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,B90,C43
`Chr8:25277867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B21,B23,B51,B8,C52
`Chr8:25278810`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B131,D10,D11
`Chr8:25279139`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C22
`Chr8:25279139`	`TC`	`T`	1bp_deletion	CDS_variant	1	C22
`Chr8:25279141`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C22
`Chr8:25279141`	`AG`	`A`	1bp_deletion	CDS_variant	1	C22
`Chr8:25279807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C53
`Chr8:25279951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:25280209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778475.1

1112 aa

556

1112

zf-NF-X1

RRM_NFXL1

PF01422 zf-NF-X1 248-263 aa PF01422 zf-NF-X1 301-319 aa PF01422 zf-NF-X1 365-382 aa PF01422 zf-NF-X1 425-440 aa PF01422 zf-NF-X1 481-492 aa PF01422 zf-NF-X1 519-536 aa PF01422 zf-NF-X1 576-593 aa PF01422 zf-NF-X1 629-644 aa PF01422 zf-NF-X1 669-683 aa PF24435 RRM_NFXL1 889-967 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	248	263	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	301	319	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	365	382	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	425	440	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	481	492	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	519	536	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	576	593	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	629	644	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF01422`	zf-NF-X1	Family	669	683	8.7e-12	45.6	NF-X1 type zinc finger
`XP_057778475.1`	Pfam	`PF24435`	RRM_NFXL1	Domain	889	967	3.5e-43	146.1	NFXL1 RRM-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922492.1
CTTTCGTTTTCACCATTTTTTCCTTGCTCACGAAGTACGCGCTGGTTTGGGCGGCACGCGTCCAACCCTATATATATCTTCTCTTCTGCTAAAACGAATCAAATAATCCTAAATCTTTCCATTAATTCATTTCACCACTTCCAAAGACCAATCTCGCATCGGAACAAAAAAAAAAAAAAACACATTCAACCGGATTGGGGTTTCCATTTCTCTGTTGTCTCTTCAGTTATCCGAGCTTGGGTGGACAATAGTCTGGCATC...

CDS

1 records

下载 CDS FASTA

LOC130997232
ATGAGCTCGGAGCAAAATAGACGGAGGGAGAACATTAATTTTCGGCCTAGAAACAACAATTCTTCGCGGAACAACCGTCGCGAGTGGGTCCCTCGGGGCACTGCGCCTGTTGTTGCCGTCGTGCAAGTTCCACCAACTAGTGCTGATAGTGCTGACCAGAATGAGATTGGAAATGGTGGGGCCTTGGTCGATAGGCCCGTTCATCCGGTTGTTCCGAACCGGAATAGGACCCATGGTGCATCAAGAGGAAACCCTGGCCA...

Protein

1 records

下载 Protein FASTA

XP_057778475.1
MSSEQNRRRENINFRPRNNNSSRNNRREWVPRGTAPVVAVVQVPPTSADSADQNEIGNGGALVDRPVHPVVPNRNRTHGASRGNPGHRHVVQREKEKVEKKHFRDDNVRMMKGVNIPQLVQEIQDKLTKGSVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLMAEKNQGTNWRCPGCQSVQLMSAKEIRYICFCGKRPDPPSDLYLTPHSCGEPCGKPLERELPGSGMSDEDICPHVCVLQCHPGPCP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器