Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002595`

染色体: Chr08 坐标: 25285261-25289683 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002595`
名称	SmilChr08G002595
描述	uncharacterized SmilChr08G002595
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25285261 - 25289683 / `+`

ID 对照

NCBI Gene ID	`LOC130997233`
GeneID	`130997233`
locus_tag	`-`
NCBI Name	`LOC130997233`
原始查询	`LOC130997233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906]; symbol=AT5G01960; hit=AT5G01960; species=arabidopsis; confidence=high
Arabidopsis	`AT5G01960` (AT5G01960) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831906] identity=64.2; qcov=0.953; evalue=0; confidence=high
Rice	`Os01g0168400` - identity=60.3; qcov=0.973; evalue=0; confidence=high
GO	GO:0061630 (ubiquitin protein ligase activity); GO:1904294 (positive regulation of ERAD pathway)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5)
InterPro	-
eggNOG	-
NR	GeneID:130997233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057778476.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057778476.1`
3	Nucleus	细胞核	0.00000	`XP_057778476.1`
4	Chromosome	染色体	0.00000	`XP_057778476.1`
5	Centromere	着丝粒	0.00000	`XP_057778476.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25285839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B56,B96,C53
`Chr8:25285993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:25287863`	`G`	`GTA`	2bp_insertion	frameshift_variant	17	B118,B27,B40,B41,B42,B46,B63,B69,B71,C16,C17,C6,C62,C70,C84,C87,D4
`Chr8:25287876`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B123,B40
`Chr8:25287881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,B80,C22
`Chr8:25287887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C35
`Chr8:25288808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B16,C31,C87
`Chr8:25289320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B36,B94,C5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778476.1

445 aa

222

445

zf-C3HC4_3

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_5

PF13920 zf-C3HC4_3 382-425 aa PF13639 zf-RING_2 383-422 aa PF13445 zf-RING_UBOX 384-419 aa PF00097 zf-C3HC4 384-421 aa PF13923 zf-C3HC4_2 384-421 aa PF14634 zf-RING_5 384-422 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778476.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	382	425	5.1e-10	39.7	Zinc finger, C3HC4 type (RING finger)
`XP_057778476.1`	Pfam	`PF13639`	zf-RING_2	Domain	383	422	1.4e-10	41.9	Ring finger domain
`XP_057778476.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	384	419	4.8e-08	33.6	RING-type zinc-finger
`XP_057778476.1`	Pfam	`PF00097`	zf-C3HC4	Domain	384	421	2.3e-09	37.7	Zinc finger, C3HC4 type (RING finger)
`XP_057778476.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	384	421	4.5e-08	33.5	Zinc finger, C3HC4 type (RING finger)
`XP_057778476.1`	Pfam	`PF14634`	zf-RING_5	Domain	384	422	2e-07	31.6	zinc-RING finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922493.1
TTTTTTCAATAAATAAATATCTTATGATCAGCCATTTTTAGACCTCTTCTCCCCCGGATAATTCTTCCTTCGTCTCTCACTCCATCTTCGCCAATATTTTTAATTCCTTCATATATTTATATTCTCCTTATTACTACATATTGCATATAGTATGGTTTATATATTCGTATCTTTGTTTGTTTCCATTACTGATTTTCTCTAATTATTGCAGCCAGTTCTCACTCTTCTGACTTTTCCTCATCTCTCAATTTATTCCTCTT...

CDS

1 records

下载 CDS FASTA

LOC130997233
ATGGAGATATCAAATTCTGAAGCTACGAGTATGGATTCCTCGGCGCCAAGCAATGGAGGGGGCGCCGCTCGAATCCTGCAGTTCCCGTCAATCCGGTTCCTGCAGTCCCCGATTTCATCCCTAATTGAATACTCCGGGTTGCTCCGGGTCCGACCCGAATACCGCTACCCCCAAGCCCTCCCGCTCATACCGGAGAGAAATACTGGCGGCGGAAATACTCAAAACCCGGGCTATTCGGACTCCGTTGACGGCGGCGATGA...

Protein

1 records

下载 Protein FASTA

XP_057778476.1
MEISNSEATSMDSSAPSNGGGAARILQFPSIRFLQSPISSLIEYSGLLRVRPEYRYPQALPLIPERNTGGGNTQNPGYSDSVDGGDEASGNSSNSGEVSIRIIGEQDRAANNGENVLGLGAEESTVGVDDVHRSGAGNGGDDNSNREGSSYQRYDIQQAARWIEQILPFSLLLLVVFIRQHLQGFVVTIYSTAILLKSNDILRKQTALKGERRISVLVGYLFFFMLHIFGIYWWHRKDDLFYPLLMIPPKAIPPFWHAIF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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