Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002599`

染色体: Chr08 坐标: 25339898-25342787 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002599`
名称	SmilChr08G002599
描述	uncharacterized SmilChr08G002599
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25339898 - 25342787 / `+`

ID 对照

NCBI Gene ID	`LOC130997235`
GeneID	`130997235`
locus_tag	`-`
NCBI Name	`LOC130997235`
原始查询	`LOC130997235`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820253]; symbol=AT3G10840; hit=AT3G10840; species=arabidopsis; confidence=high
产物	alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820253]; symbol=AT3G10840; hit=AT3G10840; species=arabidopsis; confidence=high
Arabidopsis	`AT3G10840` (AT3G10840) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820253] identity=57.9; qcov=0.947; evalue=5.7e-165; confidence=high
Rice	`Os12g0118400` - identity=55.3; qcov=0.861; evalue=1.31e-149; confidence=high
GO	GO:0003824 (catalytic activity); GO:0009941 (chloroplast envelope)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130997235

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778478.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057778478.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057778478.1`
4	Nucleus	细胞核	0.00000	`XP_057778479.1`
5	Chromosome	染色体	0.00000	`XP_057778479.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25340964`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr8:25341432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr8:25342429`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr8:25342592`	`T`	`TA`	1bp_insertion	frameshift_variant	33	A8,B100,B108,B112,B120,B128,B132,B133,B15,B17,B20,B22,B25,B30,B41,B72,B77,B81,B84,C15,C19,C20,C22,C35,C40,C41,C53,C57,C64,C65,C66,C86,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778478.1

463 aa

232

463

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 129-436 aa PF12146 Hydrolase_4 131-239 aa PF12697 Abhydrolase_6 132-440 aa

XP_057778479.1

452 aa

226

452

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF00561 Abhydrolase_1 118-425 aa PF12146 Hydrolase_4 120-228 aa PF12697 Abhydrolase_6 121-429 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778478.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	129	436	1.3e-24	87.9	alpha/beta hydrolase fold
`XP_057778478.1`	Pfam	`PF12146`	Hydrolase_4	Domain	131	239	7.1e-14	52.4	Serine aminopeptidase, S33
`XP_057778478.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	132	440	1.3e-22	82.2	Alpha/beta hydrolase family
`XP_057778479.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	118	425	1.2e-24	88.0	alpha/beta hydrolase fold
`XP_057778479.1`	Pfam	`PF12146`	Hydrolase_4	Domain	120	228	6.8e-14	52.5	Serine aminopeptidase, S33
`XP_057778479.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	121	429	1.2e-22	82.4	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922495.1
ATTGTGTTCAATGCCCAACAACACTTACAGTTGTGAATAAATAGCATAGTGATTTCCTGAACAAAAAAAGTAAAAATATCATAGTAATAACATGAATGAAAGTCGTTCGACAATCTATCTACCTCCCAATTTGCTAGGAAATGCACCAATTCTGAGTTGGGGATTTCTGCTCAAATAGTCAATTTGCAATCTTTGTTTCTCCTCATAAGTCCTCTCCTCTGTGTATATTAGTGTTGTGTTGTTGATGAGTATTTATGGAG...

XM_057922496.1
CAACACTTACAGTTGTGAATAAATAGCATAGTGATTTCCTGAACAAAAAAAGTAAAAATATCATAGTAATAACATGAATGAAAGTCGTTCGACAATCTATCTACCTCCCAATTTGCTAGGAAATGCACCAATTCTGAGTTGGGGATTTCTGCTCAAATAGTCAATTTGCAATCTTTGTTTCTCCTCATAAGTCCTCTCCTCTGTGTATATTAGTGTTGTGTTGTTGATGAGTATTTATGGAGTACATGGGCAGTTCCCTG...

CDS

2 records

下载 CDS FASTA

LOC130997235
ATGAGTATTTATGGAGTACATGGGCAGTTCCCTGTTGCTAGCCCACCCAAATTACCCAACCCAAAATCACTGCACCAATCTCCTCACCATGTTTCTTACGCTTTTACCTCCCAAAATCCCATTTCTGAGGATAAGCTTGTTGTTAGAGCTGCTGCTTCTGCTCCCCCACTCACCGGTGATTTTTCCGAGGGAGCAAAACCAAGGCGAAGAATTGCTGGAATAGATGAGGATGAGATAGAGGATCCAACTAGTTTAGCTGA...

LOC130997235
ATGAGTATTTATGGAGTACATGGGCAGTTCCCTGTTGCTAGCCCACCCAAATTACCCAACCCAAAATCACTGCACCAATCTCCTCACCATGTTTCTTATAAGCTTGTTGTTAGAGCTGCTGCTTCTGCTCCCCCACTCACCGGTGATTTTTCCGAGGGAGCAAAACCAAGGCGAAGAATTGCTGGAATAGATGAGGATGAGATAGAGGATCCAACTAGTTTAGCTGATTCTGATAGTTGTTTCTGTACATTTAATGGGGT...

Protein

2 records

下载 Protein FASTA

XP_057778478.1
MSIYGVHGQFPVASPPKLPNPKSLHQSPHHVSYAFTSQNPISEDKLVVRAAASAPPLTGDFSEGAKPRRRIAGIDEDEIEDPTSLADSDSCFCTFNGVQIHHKICDAQDDSLQEGLTPHSPAYSKRVSYPMILLHGFGASVYSWSRVMKPLATLTGSKVLAFDRPAFGLTSRGAPDSRPLNPYSMMFSALATMYFIDFLAAEKAILVGHSAGALVALDTYFEAPERVAALILVAPAILAPFTMKRSAVKEDQNGPDNQHQ...

XP_057778479.1
MSIYGVHGQFPVASPPKLPNPKSLHQSPHHVSYKLVVRAAASAPPLTGDFSEGAKPRRRIAGIDEDEIEDPTSLADSDSCFCTFNGVQIHHKICDAQDDSLQEGLTPHSPAYSKRVSYPMILLHGFGASVYSWSRVMKPLATLTGSKVLAFDRPAFGLTSRGAPDSRPLNPYSMMFSALATMYFIDFLAAEKAILVGHSAGALVALDTYFEAPERVAALILVAPAILAPFTMKRSAVKEDQNGPDNQHQGKSSDSSAKGN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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