Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002601`

染色体: Chr08 坐标: 25360402-25363458 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002601`
名称	SmilChr08G002601
描述	GCN5-related N-acetyltransferase 3, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	25360402 - 25363458 / `-`

ID 对照

NCBI Gene ID	`LOC130997237`
GeneID	`130997237`
locus_tag	`-`
NCBI Name	`LOC130997237`
原始查询	`LOC130997237`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 3, chloroplastic
产物	GCN5-related N-acetyltransferase 3%2C chloroplastic
Arabidopsis	`AT4G19985` (AT4G19985) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827743] identity=43.3; qcov=0.862; evalue=9.49e-41; confidence=medium
Rice	`Os05g0516300` - identity=35.8; qcov=0.553; evalue=1.35e-15; confidence=low
GO	GO:0004343 (glucosamine 6-phosphate N-acetyltransferase activity); GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0006048 (UDP-N-acetylglucosamine biosynthetic process); GO:0048029 (monosaccharide binding)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF13508 (Acetyltransf_7)
InterPro	-
eggNOG	-
NR	GeneID:130997237

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778482.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057778483.1`
3	Mitochondrion	线粒体	0.20000	`XP_057778483.1`
4	Nucleus	细胞核	0.00000	`XP_057778482.1`
5	Chromosome	染色体	0.00000	`XP_057778482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:25360705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C13,C39,C83
`Chr8:25363180`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C70
`Chr8:25363180`	`GC`	`G`	1bp_deletion	CDS_variant	1	C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778482.1

251 aa

126

251

Acetyltransf_1

Acetyltransf_7

PF00583 Acetyltransf_1 131-205 aa PF13508 Acetyltransf_7 134-205 aa

XP_057778483.1

217 aa

108

217

Acetyltransf_1

Acetyltransf_7

PF00583 Acetyltransf_1 131-190 aa PF13508 Acetyltransf_7 134-180 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778482.1`	Pfam	`PF00583`	Acetyltransf_1	Family	131	205	4.4e-12	47.0	Acetyltransferase (GNAT) family
`XP_057778482.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	134	205	8.5e-09	36.4	Acetyltransferase (GNAT) domain
`XP_057778483.1`	Pfam	`PF00583`	Acetyltransf_1	Family	131	190	4.1e-10	40.7	Acetyltransferase (GNAT) family
`XP_057778483.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	134	180	8.4e-07	30.0	Acetyltransferase (GNAT) domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922499.1
CTGCATAAAATTAATATCATCTTATAAATCTTGATCTCTTTTTGTTTAAGAATTTATCTCTAGAATATGAATCCACTCAACCAATCTTAAGTAATTTTGGGGAACATTAACCTCAAGTAATCGAATGGACGGAAGTTGATATTGAATCTGGAGATAATCTAGCCCAATGCCTAATAGTATCAGGAAATCAAAATTATAATCTCAGAAAACAAGCTGTAATGGCAGTTGCAGCGGCCGTACAAGTCGGTAATCTTCCCTCC...

XM_057922500.1
CTGCATAAAATTAATATCATCTTATAAATCTTGATCTCTTTTTGTTTAAGAATTTATCTCTAGAATATGAATCCACTCAACCAATCTTAAGTAATTTTGGGGAACATTAACCTCAAGTAATCGAATGGACGGAAGTTGATATTGAATCTGGAGATAATCTAGCCCAATGCCTAATAGTATCAGGAAATCAAAATTATAATCTCAGAAAACAAGCTGTAATGGCAGTTGCAGCGGCCGTACAAGTCGGTAATCTTCCCTCC...

CDS

2 records

下载 CDS FASTA

LOC130997237
ATGGCAGTTGCAGCGGCCGTACAAGTCGGTAATCTTCCCTCCAAATTCCGACGGCTTCTGCCATCGCCACCCAAAATCGCCGCCCAAATCAAGCCCAACTCCGCGCCTCCGCAGCTATTGGTGTCTACAAACCCATCCCACGTGAACCCCAGTCAGCTGAGAGAGCTCTACGCCGTCTGCAACCACTCCTGCCACCGCTTCCCCACAATCGACGCCGCGGGCAGAGTGGAGCCCGTCGACGCGCTCAAGCTGAGCACTGC...

Protein

2 records

下载 Protein FASTA

XP_057778482.1
MAVAAAVQVGNLPSKFRRLLPSPPKIAAQIKPNSAPPQLLVSTNPSHVNPSQLRELYAVCNHSCHRFPTIDAAGRVEPVDALKLSTAVSHSSVVVSVFTKPELVASQTSTPENAPSVAGVGGNWIRKVAPVTPENGRLIGFGRAVSDLGLTASIYDIMVHPFFRGKGIGRMIVKKIIRMLINRDIYDIAALCNDRERLFFRACGFGDDMLGSTTMMYAAAASLSSLSGEKEMIVAGRKLLLVPPQREFKQK

XP_057778483.1
MAVAAAVQVGNLPSKFRRLLPSPPKIAAQIKPNSAPPQLLVSTNPSHVNPSQLRELYAVCNHSCHRFPTIDAAGRVEPVDALKLSTAVSHSSVVVSVFTKPELVASQTSTPENAPSVAGVGGNWIRKVAPVTPENGRLIGFGRAVSDLGLTASIYDIMVHPFFRGKGIGRMIVKKIIRMLINRDIYDIAALCNDRESSAGYFSEHVDSEMICWDPLQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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