当前解析结果
SmilChr08G002625| 统一新 Gene ID | SmilChr08G002625 |
|---|---|
| 名称 | SmilChr08G002625 |
| 描述 | uncharacterized SmilChr08G002625 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 25624821 - 25630989 / + |
| NCBI Gene ID | LOC130997263 |
|---|---|
| GeneID | 130997263 |
| locus_tag | - |
| NCBI Name | LOC130997263 |
| 原始查询 | LOC130997263 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:835189]; symbol=AT5G51150; hit=AT5G51150; species=arabidopsis; confidence=high |
| 产物 | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:835189]; symbol=AT5G51150; hit=AT5G51150; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G51150 (AT5G51150)Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Source:NCBI gene (formerly Entrezgene);Acc:835189] identity=77.3; qcov=0.95; evalue=0; confidence=high |
| Rice | Os07g0494900- identity=73.3; qcov=0.362; evalue=5.46e-90; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02466 (Tim17); PF15982 (TMEM135_C_rich) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997263 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057778511.1 |
| 2 | Peroxisome membrane | 过氧化物酶体膜 | 0.80000 | XP_057778511.1 |
| 3 | Mitochondrion | 线粒体 | 0.60000 | XP_057778511.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057778511.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778511.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:25625029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:25625060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,B56 |
Chr8:25625213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B28,C46,C81,D2 |
Chr8:25625217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:25627182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B88,C16,C53 |
Chr8:25627683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:25627875 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B120,B56,B96,C41 |
Chr8:25628490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:25629098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B45,C63,C67,D10 |
Chr8:25630454 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B88,C12,C4 |
Chr8:25630469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778511.1PF02466
Tim17 66-158 aa
PF15982
TMEM135_C_rich 287-415 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778511.1 |
Pfam | PF02466 |
Tim17 | Family | 66 | 158 | 2.3e-12 | 47.9 | Tim17/Tim22/Tim23/Pmp24 family |
XP_057778511.1 |
Pfam | PF15982 |
TMEM135_C_rich | Domain | 287 | 415 | 2.6e-10 | 41.7 | N-terminal cysteine-rich region of Transmembrane protein 135 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。