当前解析结果
SmilChr08G002626| 统一新 Gene ID | SmilChr08G002626 |
|---|---|
| 名称 | SmilChr08G002626 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 25633170 - 25634613 / - |
| NCBI Gene ID | LOC130997264 |
|---|---|
| GeneID | 130997264 |
| locus_tag | - |
| NCBI Name | LOC130997264 |
| 原始查询 | LOC130997264 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=38; qcov=0.743; evalue=4.56e-30; confidence=medium |
| Rice | Os08g0125300- identity=43.2; qcov=0.855; evalue=6.75e-43; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997264 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057778512.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057778512.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057778512.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778512.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778512.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:25633876 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B63,B70,B93,B95,C6 |
Chr8:25633876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B63,B70,B93,B95,C6 |
Chr8:25633938 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr8:25633939 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B29,B30,B59,C74 |
Chr8:25633975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,B90,B92,C21 |
Chr8:25634000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A9,B105,B122,B46,C59 |
Chr8:25634024 |
A |
AG |
1bp_insertion | frameshift_variant | 4 | A10,A3,C45,C60 |
Chr8:25634024 |
A |
AG |
1bp_insertion | CDS_variant | 4 | A10,A3,C45,C60 |
Chr8:25634050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,C52 |
Chr8:25634083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr8:25634117 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr8:25634200 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B124,C63,C70 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。