当前解析结果
SmilChr01G003862| 统一新 Gene ID | SmilChr01G003862 |
|---|---|
| 名称 | SmilChr01G003862 |
| 描述 | uncharacterized SmilChr01G003862 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 56884765 - 56886698 / + |
| NCBI Gene ID | LOC130997275 |
|---|---|
| GeneID | 130997275 |
| locus_tag | - |
| NCBI Name | LOC130997275 |
| 原始查询 | LOC130997275 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low |
| 产物 | TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002]; symbol=AT3G17380; hit=AT3G17380; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G17380 (AT3G17380)TRAF-like family protein [Source:NCBI gene (formerly Entrezgene);Acc:821002] identity=34.7; qcov=0.984; evalue=1.07e-62; confidence=low |
| Rice | Os12g0489100 (OsM13)- identity=32.2; qcov=0.367; evalue=1.2e-13; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00917 (MATH); PF22486 (MATH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997275 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.60000 | XP_057778528.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057778528.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057778528.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778528.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778528.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:56885098 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:56885274 |
TC |
T |
1bp_deletion | frameshift_variant | 6 | A8,B38,B63,B70,B83,C9 |
Chr1:56885299 |
C |
CAT |
2bp_insertion | frameshift_variant | 9 | B134,B42,B43,B81,B91,C2,C52,C6,D5 |
Chr1:56885344 |
GT |
G |
1bp_deletion | frameshift_variant | 163 | A1,A10,A14,A15,A18,A19,A2,A21,A23,A24,A25,A3,A5,A6,A7,A9,B10,B102,B107,B109,B111,B112,B115,B118,B119,B120,B126,B127,B128,B129,B13,B130,B132,B134,B135,B136,B138,B139,B16,B19,B2,B20,B25,B27,B29,B30,B33,B34,B35,B37,B39,B40,B41,B42,B43,B44,B45,B46,B48,B49,B5,B50,B52,B53,B55,B56,B57,B58,B59,B6,B60,B61,B63,B65,B68,B7,B70,B71,B72,B74,B75,B76,B79,B8,B80,B81,B82,B83,B86,B87,B88,B9,B90,B91,B92,B95,B96,B97,B98,B99,C1,C10,C12,C13,C17,C18,C20,C21,C22,C24,C25,C27,C28,C29,C30,C31,C32,C38,C39,C4,C40,C41,C42,C43,C45,C47,C48,C49,C5,C50,C51,C52,C53,C55,C56,C58,C59,C6,C60,C62,C63,C64,C66,C67,C68,C7,C70,C76,C77,C78,C79,C80,C81,C84,C9,D1,D10,D2,D3,D4,D5,D8,D9 |
Chr1:56885373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:56885403 |
TTA |
T |
2bp_deletion | frameshift_variant | 1 | C52 |
Chr1:56885403 |
TTA |
T |
2bp_deletion | CDS_variant | 1 | C52 |
Chr1:56885578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr1:56886262 |
CAG |
C |
2bp_deletion | frameshift_variant | 1 | C61 |
Chr1:56886262 |
CAG |
C |
2bp_deletion | CDS_variant | 1 | C61 |
Chr1:56886525 |
TGC |
T |
2bp_deletion | frameshift_variant | 2 | B61,D3 |
Chr1:56886525 |
TGC |
T |
2bp_deletion | CDS_variant | 2 | B61,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778528.1PF22486
MATH_2 26-152 aa
PF00917
MATH 34-154 aa
PF22486
MATH_2 175-301 aa
PF00917
MATH 180-303 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778528.1 |
Pfam | PF22486 |
MATH_2 | Domain | 26 | 152 | 9.8e-56 | 188.5 | MATH domain |
XP_057778528.1 |
Pfam | PF00917 |
MATH | Domain | 34 | 154 | 7.2e-23 | 81.7 | MATH domain |
XP_057778528.1 |
Pfam | PF22486 |
MATH_2 | Domain | 175 | 301 | 9.8e-56 | 188.5 | MATH domain |
XP_057778528.1 |
Pfam | PF00917 |
MATH | Domain | 180 | 303 | 7.2e-23 | 81.7 | MATH domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。