Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002652`

染色体: Chr08 坐标: 26009996-26015423 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002652`
名称	SmilChr08G002652
描述	flavin mononucleotide hydrolase 1, chloroplatic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26009996 - 26015423 / `+`

ID 对照

NCBI Gene ID	`LOC130997290`
GeneID	`130997290`
locus_tag	`-`
NCBI Name	`LOC130997290`
原始查询	`LOC130997290`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	flavin mononucleotide hydrolase 1, chloroplatic-like
产物	flavin mononucleotide hydrolase 1%2C chloroplatic-like
Arabidopsis	`AT1G79790` (FHY1) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844318] identity=63.5; qcov=0.944; evalue=2.03e-76; confidence=high
Rice	`Os11g0300400` - identity=54.5; qcov=0.186; evalue=3.19e-06; confidence=weak
GO	-
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro	-
eggNOG	-
NR	GeneID:130997290

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778539.1`
2	Cytoplasm	细胞质	1.00000	`XP_057778541.1`
3	Nucleus	细胞核	0.80000	`XP_057778541.1`
4	Mitochondrion	线粒体	0.60000	`XP_057778539.1`
5	Cytosol	细胞质基质	0.60000	`XP_057778541.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26010237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:26010243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B78,D2
`Chr8:26010260`	`C`	`T`	EMS_canonical_SNV	stop_gained	13	A10,A13,A5,B67,B76,C1,C10,C55,C72,C74,C85,D8,D9
`Chr8:26010266`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A6,B37,B82,C12
`Chr8:26010278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:26010284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr8:26010317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr8:26010336`	`C`	`CCA`	2bp_insertion	frameshift_variant	109	A10,A11,A15,A16,A18,A19,A20,A21,A23,A25,A3,A4,A7,A9,B1,B100,B110,B111,B112,B113,B115,B117,B12,B120,B122,B125,B127,B131,B133,B134,B135,B137,B138,B14,B16,B17,B2,B20,B3,B30,B31,B32,B40,B45,B49,B5,B50,B51,B53,B57,B63,B64,B65,B66,B68,B7,B70,B72,B74,B76,B77,B78,B8,B81,B85,B86,B9,B91,B93,B95,B97,B99,C1,C13,C17,C18,C19,C21,C23,C28,C29,C30,C31,C33,C35,C40,C42,C43,C45,C47,C49,C54,C57,C60,C61,C62,C63,C64,C67,C7,C75,C77,C8,C80,C87,C9,D10,D4,D5
`Chr8:26010344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:26010356`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,D2
`Chr8:26010374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B57,B78
`Chr8:26010406`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B28,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778539.1

259 aa

130

259

HAD_2

Hydrolase

PF13419 HAD_2 133-230 aa PF00702 Hydrolase 137-228 aa

XP_057778540.1

258 aa

129

258

HAD_2

Hydrolase

Hydrolase_like

PF13419 HAD_2 133-229 aa PF00702 Hydrolase 137-227 aa PF13242 Hydrolase_like 189-244 aa

XP_057778541.1

177 aa

177

HAD_2

Hydrolase

PF13419 HAD_2 52-148 aa PF00702 Hydrolase 56-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778539.1`	Pfam	`PF13419`	HAD_2	Family	133	230	1.5e-10	42.1	Haloacid dehalogenase-like hydrolase
`XP_057778539.1`	Pfam	`PF00702`	Hydrolase	Domain	137	228	2e-11	45.4	haloacid dehalogenase-like hydrolase
`XP_057778540.1`	Pfam	`PF13419`	HAD_2	Family	133	229	3.6e-11	44.1	Haloacid dehalogenase-like hydrolase
`XP_057778540.1`	Pfam	`PF00702`	Hydrolase	Domain	137	227	3.3e-12	47.9	haloacid dehalogenase-like hydrolase
`XP_057778540.1`	Pfam	`PF13242`	Hydrolase_like	Domain	189	244	7e-05	23.4	HAD-hyrolase-like
`XP_057778541.1`	Pfam	`PF13419`	HAD_2	Family	52	148	7.7e-11	43.0	Haloacid dehalogenase-like hydrolase
`XP_057778541.1`	Pfam	`PF00702`	Hydrolase	Domain	56	146	1.2e-11	46.1	haloacid dehalogenase-like hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057922557.1
ATTATGATAGTGAGATAAAAAATAAAAAAAAATTTAAACCAAAAAAATAAAAAAATTGTGAAAAAGTCGAGAAATTAAATCATGTTCTTTGGTTCCACAAATCTAATTTTATCCGTCTATTTTGCTAAACTAATATCCATCTTAATATTTCAATCGAAGAATTAAGATAAGGGAACTGGCAAGAAAGAGGATCTGCTGCGGCGGTGAATGGCAGCTCATAGATTGGTGTGGAGACTCAGTAGCTTTCCGGTGGTAAAAGT...

XM_057922556.1
ATTTTGCTAAACTAATATCCATCTTAATATTTCAATCGAAGAATTAAGATAAGGGAACTGGCAAGAAAGAGGATCTGCTGCGGCGGTGAATGGCAGCTCATAGATTGGTGTGGAGACTCAGTAGCTTTCCGGTGGTAAAAGTAGAGCAACGGCCGCCATTAACAGCATCCCCATATTCTACTAGCCGTGAAAAGGATATGCCCCTCTTTTACAAAAGCACCACCACCACCGTCGCTGCCAATGACACCACAAGAAAGCTG...

CDS

3 records

下载 CDS FASTA

LOC130997290
ATGGCAGCTCATAGATTGGTGTGGAGACTCAGTAGCTTTCCGGTGGTAAAAGTAGAGCAACGGCCGCCATTAACAGCATCCCCATATTCTACTAGCCGTGAAAAGGATATGCCCCTCTTTTACAAAAGCACCACCACCACCGTCGCTGCCAATGACACCACAAGAAAGCTGCCCATTCTGCTTTTCGACATTATGGACACAATCGTCCGCGATCCTTTTTACCACGACATCCCTGCCTTTTTCGGAATGTCTATGAAAGA...

Protein

3 records

下载 Protein FASTA

XP_057778539.1
MAAHRLVWRLSSFPVVKVEQRPPLTASPYSTSREKDMPLFYKSTTTTVAANDTTRKLPILLFDIMDTIVRDPFYHDIPAFFGMSMKELLECKHPTAWLEFEKGLINEVELAQKFFKDGRPLDLEGLKSCMRRGYAYIEGVEDLLTDLKNNGYEMHTSTNYPIWYEIIEEKLKLSSYLSWTFCSCTMGKRKPDPDFYMDMLKHLKVEPTCCVFIDDSRMKNVEAALHAGFNGIHFKTADSLRKDLSNLGILLHTENPNFY

XP_057778540.1
MAAHRLVWRLSSFPVVKVEQRPPLTASPYSTSREKDMPLFYKSTTTTVAANDTTRKLPILLFDIMDTIVRDPFYHDIPAFFGMSMKELLECKHPTAWLEFEKGLINEVELAQKFFKDGRPLDLEGLKSCMRRGYAYIEGVEDLLTDLKNNGYEMHTSTNYPIWYEIIEEKLKLSSYLSWTFCSCTMGKRKPDPDFYMDMLKHLKVEPTCCVFIDDRMKNVEAALHAGFNGIHFKTADSLRKDLSNLGILLHTENPNFY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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