Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002680`

染色体: Chr08 坐标: 26346163-26353377 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002680`
名称	SmilChr08G002680
描述	CDPK-related kinase 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26346163 - 26353377 / `-`

ID 对照

NCBI Gene ID	`LOC130997313`
GeneID	`130997313`
locus_tag	`-`
NCBI Name	`LOC130997313`
原始查询	`LOC130997313`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CDPK-related kinase 3-like
产物	CDPK-related kinase 3-like
Arabidopsis	`AT2G46700` (CRK3) CDPK-related kinase 3 [Source:NCBI gene (formerly Entrezgene);Acc:819282] identity=69.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os06g0714200` (CAMK) - identity=68.8; qcov=1.06; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF06293 (Kdo); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130997313

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057778573.1`
2	Cytosol	细胞质基质	0.40000	`XP_057778573.1`
3	Nucleus	细胞核	0.00000	`XP_057778573.1`
4	Chromosome	染色体	0.00000	`XP_057778573.1`
5	Centromere	着丝粒	0.00000	`XP_057778573.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26346750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:26347924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C14
`Chr8:26348017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr8:26352422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B34,C68
`Chr8:26352433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr8:26352440`	`A`	`AC`	1bp_insertion	frameshift_variant	5	B112,B130,B139,B51,C43
`Chr8:26352440`	`A`	`AC`	1bp_insertion	CDS_variant	5	B112,B130,B139,B51,C43
`Chr8:26352445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B112,B130,B139,B51,C43
`Chr8:26352448`	`C`	`CA`	1bp_insertion	frameshift_variant	6	B112,B130,B139,B51,B90,C43
`Chr8:26352583`	`GC`	`G`	1bp_deletion	frameshift_variant	75	A11,A15,A16,A19,A20,A22,A6,B104,B105,B115,B12,B125,B126,B129,B131,B134,B136,B137,B16,B17,B28,B3,B30,B34,B37,B38,B39,B4,B40,B47,B48,B50,B54,B57,B59,B65,B67,B68,B70,B8,B84,B91,B95,C10,C13,C14,C15,C16,C19,C23,C30,C32,C33,C34,C37,C38,C39,C44,C49,C56,C59,C64,C65,C66,C68,C7,C70,C74,C8,C84,D1,D2,D6,D7,D8
`Chr8:26352586`	`GC`	`G`	1bp_deletion	frameshift_variant	166	A10,A16,A18,A20,A21,A23,A24,A25,A3,A4,A5,A7,A8,A9,B1,B100,B101,B103,B105,B106,B107,B108,B109,B11,B110,B112,B113,B114,B117,B118,B120,B121,B122,B123,B124,B13,B130,B131,B132,B134,B139,B14,B140,B15,B17,B19,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B30,B31,B32,B33,B35,B36,B41,B42,B43,B44,B45,B46,B47,B49,B5,B51,B52,B53,B55,B56,B60,B61,B62,B63,B64,B67,B7,B71,B72,B74,B77,B78,B79,B80,B81,B82,B83,B85,B86,B87,B88,B9,B90,B92,B93,B94,B95,B96,B97,B98,B99,C11,C12,C13,C17,C18,C19,C2,C21,C22,C24,C25,C27,C28,C29,C3,C31,C35,C36,C4,C41,C42,C43,C44,C45,C46,C48,C49,C5,C50,C51,C52,C55,C58,C6,C60,C62,C66,C67,C69,C71,C72,C73,C75,C78,C79,C80,C81,C83,C85,C86,C87,D1,D10,D11,D3,D5,D7,D9
`Chr8:26352677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B3,B84,C29,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778573.1

592 aa

296

592

Pkinase

PK_Tyr_Ser-Thr

Kdo

PF00069 Pkinase 141-403 aa PF07714 PK_Tyr_Ser-Thr 142-395 aa PF06293 Kdo 218-294 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778573.1`	Pfam	`PF00069`	Pkinase	Domain	141	403	7.3e-71	239.4	Protein kinase domain
`XP_057778573.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	142	395	1.9e-33	116.6	Protein tyrosine and serine/threonine kinase
`XP_057778573.1`	Pfam	`PF06293`	Kdo	Family	218	294	3.7e-06	27.3	Lipopolysaccharide kinase (Kdo/WaaP) family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922590.1
AATTTGGGACAGATATTAAGAGCCGTTTCCCTCCGTCTTAATTTTCTACTATTTTTGCACATGTATTTGTTGTAGAAAATCTCACTGATGCTTTTCGTTTTCTATTTTGTTTCTCCCCTTAGGAAGATAGTATAATTAGTGTCCGTTTTTTCGTCTCTTTGTCCAATTAACTTGTTTGAGTTTTTAGTCAAAAAAAAAAAAAAACTTGTTTGAGTTTTGACCCAGTTTGCTTGCTTGTCCCTTCGAAATTGTGACTGCAA...

CDS

1 records

下载 CDS FASTA

LOC130997313
ATGGGGCAGTGTTACGGTAAGACGATCCCCACCGAAGACAACGATGGGTACCCCACCAGCACCACCACCGCCGCCGATCTCCCTCCCCAGACGCCGCCTCGCAATGGCACTCCGGCGAGATCCTCCGCCGCAAACAGCCCCTGGCCGAGTCCCTACCCCAGCGCAACTCCTGCGGGGGTCTCTCCCTCTCCGGCGAGGTCGACGCCGATGAGGTTCTTCAAGAAGCCGTTTCCGCCGCCCTCCCCGGCCAAGCATATTAG...

Protein

1 records

下载 Protein FASTA

XP_057778573.1
MGQCYGKTIPTEDNDGYPTSTTTAADLPPQTPPRNGTPARSSAANSPWPSPYPSATPAGVSPSPARSTPMRFFKKPFPPPSPAKHIRASLRKLGHKRKSPRQGPIPEDAAAAAEDAEQQQQQQQHALDKNFGYNKNFGAKYELGKEVGRGHFGHTCYAKGRKGELKDLPLAVKIISKPKMTTAISIEDVRREVKILKALSGHRHLVRFYDACEDANNVYIIMELCEGGELLDRILSKGGRYTEEEAKLIIVQILSVVAFC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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