Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002692`

染色体: Chr08 坐标: 26529092-26531646 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002692`
名称	SmilChr08G002692
描述	uncharacterized SmilChr08G002692
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26529092 - 26531646 / `+`

ID 对照

NCBI Gene ID	`LOC130997325`
GeneID	`130997325`
locus_tag	`-`
NCBI Name	`LOC130997325`
原始查询	`LOC130997325`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA-directed RNA polymerase, subunit M, archaeal [Source:NCBI gene (formerly Entrezgene);Acc:826299]; symbol=AT4G07950; hit=AT4G07950; species=arabidopsis; confidence=medium
产物	DNA-directed RNA polymerase, subunit M, archaeal [Source:NCBI gene (formerly Entrezgene);Acc:826299]; symbol=AT4G07950; hit=AT4G07950; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G07950` (AT4G07950) DNA-directed RNA polymerase, subunit M, archaeal [Source:NCBI gene (formerly Entrezgene);Acc:826299] identity=59.3; qcov=0.991; evalue=7.27e-41; confidence=medium
Rice	`Os02g0672700` - identity=49.5; qcov=1.02; evalue=5.23e-31; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0003899 (DNA-directed RNA polymerase activity); GO:0005666 (RNA polymerase III complex); GO:0006351 (DNA-templated transcription); GO:0006355 (regulation of DNA-templated transcription); GO:0006386 (termination of RNA polymerase III transcription); GO:0008270 (zinc ion binding)
KEGG	smil03020 (RNA polymerase - Salvia miltiorrhiza (redroot sage))
Pfam	PF01096 (Zn_ribbon_TFIIS); PF02150 (Zn_ribbon_RPB9)
InterPro	-
eggNOG	-
NR	GeneID:130997325

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778591.1`
2	Cytoplasm	细胞质	1.00000	`XP_057778591.1`
3	Chromosome	染色体	0.00000	`XP_057778591.1`
4	Centromere	着丝粒	0.00000	`XP_057778591.1`
5	Chromatin	染色质	0.00000	`XP_057778591.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26530632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B33,B49,B98,C32,C68
`Chr8:26530786`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B100
`Chr8:26530786`	`GC`	`G`	1bp_deletion	CDS_variant	1	B100
`Chr8:26531293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr8:26531307`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C13,C39,C83,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778591.1

109 aa

109

Zn_ribbon_RPB9

Zn_ribbon_TFIIS

PF02150 Zn_ribbon_RPB9 1-36 aa PF01096 Zn_ribbon_TFIIS 70-107 aa

XP_057778592.1

109 aa

109

Zn_ribbon_RPB9

Zn_ribbon_TFIIS

PF02150 Zn_ribbon_RPB9 1-36 aa PF01096 Zn_ribbon_TFIIS 70-107 aa

XP_057778593.1

109 aa

109

Zn_ribbon_RPB9

Zn_ribbon_TFIIS

PF02150 Zn_ribbon_RPB9 1-36 aa PF01096 Zn_ribbon_TFIIS 70-107 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778591.1`	Pfam	`PF02150`	Zn_ribbon_RPB9	Domain	1	36	1.6e-09	38.2	RNA polymerases M/15 Kd subunit
`XP_057778591.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	70	107	1.6e-19	70.1	Transcription factor S-II (TFIIS)
`XP_057778592.1`	Pfam	`PF02150`	Zn_ribbon_RPB9	Domain	1	36	1.6e-09	38.2	RNA polymerases M/15 Kd subunit
`XP_057778592.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	70	107	1.6e-19	70.1	Transcription factor S-II (TFIIS)
`XP_057778593.1`	Pfam	`PF02150`	Zn_ribbon_RPB9	Domain	1	36	1.6e-09	38.2	RNA polymerases M/15 Kd subunit
`XP_057778593.1`	Pfam	`PF01096`	Zn_ribbon_TFIIS	Domain	70	107	1.6e-19	70.1	Transcription factor S-II (TFIIS)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057922609.1
CAAGATTAGAGTTTTGTCTTGGATTTTTTTAAAGGATCAGAACTTGTTTGATGCTTCTAGTGCTCGTTGGATGTCTGATTCGAGATCGTGTTTGGAGTTGTAAGTTTGGTAATTTTTGCGAACTGTTATGTAGGTGTTTTTAGCACTGAAGTGACCTTTTTGTAAGGGATGAAATACCCGTTGTACTCTAATTGTGTTCTTAATATATTTCTTTTTCTGATTAAAAAAAAAAAAATCGAATACATAGATAACTCGAAAAT...

XM_057922610.1
TAAGGGATGAAATACCCGTTGTACTCTAATTGTGTTCTTAATATATTTCTTTTTCTGATTAAAAAAAAAAAAATCGAATACATAGATAACTCGAAAATATTTACCTTCCCTAAAAAAAAATATTTACCTATTCAAGTTTATATGACCCATCCAATATGTTACTGAATTAAATACTTAGATTAGAACTAAAAACTGAAACCCTTCCCCCGTCGAAGCCTCCAACCTCCGGGATCCGGCTGCTCTGGCTCACTGGATCGCCT...

CDS

3 records

下载 CDS FASTA

LOC130997325
ATGGAGTTCTGCCCAACTTGCGGGAATATGCTGCTCTATCAGTTGCCACACATGGGGCACGCTGCCCGATTTACCTGTCCGACGTGCCCTTATGTATGCAACATAGAGGCTCAGGTTAAGATAAAGAGACATGTGCGTTTGGTTAAGAAGGCGATAGATCCTATTTTCACTAAAGAAGACCGCAAGAACTTCCAGGAAACTAAAGAGAGCTGCCCCGTATGCGGTCATGATAAAGCCGGATTCATTCAATTGCAGACTAG...

Protein

3 records

下载 Protein FASTA

XP_057778591.1
MEFCPTCGNMLLYQLPHMGHAARFTCPTCPYVCNIEAQVKIKRHVRLVKKAIDPIFTKEDRKNFQETKESCPVCGHDKAGFIQLQTRSADEPMTIFYECRKCEFTWREG

XP_057778592.1
MEFCPTCGNMLLYQLPHMGHAARFTCPTCPYVCNIEAQVKIKRHVRLVKKAIDPIFTKEDRKNFQETKESCPVCGHDKAGFIQLQTRSADEPMTIFYECRKCEFTWREG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器