Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002713`

染色体: Chr08 坐标: 26720750-26725732 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002713`
名称	SmilChr08G002713
描述	auxin response factor 18-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26720750 - 26725732 / `-`

ID 对照

NCBI Gene ID	`LOC130997344`
GeneID	`130997344`
locus_tag	`-`
NCBI Name	`LOC130997344`
原始查询	`LOC130997344`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	auxin response factor 18-like
产物	auxin response factor 18-like
Arabidopsis	`AT3G61830` (ARF18) auxin response factor 18 [Source:NCBI gene (formerly Entrezgene);Acc:825356] identity=55.9; qcov=0.98; evalue=0; confidence=high
Rice	`Os02g0557200` (OsARF7) - identity=52.6; qcov=0.975; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0009725 (response to hormone)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02309 (AUX_IAA); PF02362 (B3); PF06507 (ARF_AD)
InterPro	-
eggNOG	-
NR	GeneID:130997344

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778616.1`
2	Chromosome	染色体	0.00000	`XP_057778616.1`
3	Centromere	着丝粒	0.00000	`XP_057778616.1`
4	Chromatin	染色质	0.00000	`XP_057778616.1`
5	Telomere	端粒	0.00000	`XP_057778616.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26721107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B85,D6
`Chr8:26721407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B132,B88,C11,C69
`Chr8:26721582`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:26721985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:26722100`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B17,B27,B72
`Chr8:26722103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:26722354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A25,B37,B53,C22
`Chr8:26722456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr8:26722503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr8:26722650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr8:26723338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:26724893`	`AG`	`A`	1bp_deletion	frameshift_variant	6	B21,B36,B46,B83,C59,D3

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778616.1

692 aa

346

692

ARF_AD

AUX_IAA

PF02362 B3 127-226 aa PF06507 ARF_AD 274-355 aa PF02309 AUX_IAA 566-613 aa PF02309 AUX_IAA 623-667 aa

XP_057778618.1

692 aa

346

692

ARF_AD

AUX_IAA

PF02362 B3 127-226 aa PF06507 ARF_AD 274-355 aa PF02309 AUX_IAA 566-613 aa PF02309 AUX_IAA 623-667 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778616.1`	Pfam	`PF02362`	B3	Domain	127	226	3.2e-24	85.5	B3 DNA binding domain
`XP_057778616.1`	Pfam	`PF06507`	ARF_AD	Domain	274	355	1.9e-35	121.3	Auxin response factor ancillary domain
`XP_057778616.1`	Pfam	`PF02309`	AUX_IAA	Family	566	613	1.1e-16	62.0	AUX/IAA family
`XP_057778616.1`	Pfam	`PF02309`	AUX_IAA	Family	623	667	1.1e-16	62.0	AUX/IAA family
`XP_057778618.1`	Pfam	`PF02362`	B3	Domain	127	226	3.2e-24	85.5	B3 DNA binding domain
`XP_057778618.1`	Pfam	`PF06507`	ARF_AD	Domain	274	355	1.9e-35	121.3	Auxin response factor ancillary domain
`XP_057778618.1`	Pfam	`PF02309`	AUX_IAA	Family	566	613	1.1e-16	62.0	AUX/IAA family
`XP_057778618.1`	Pfam	`PF02309`	AUX_IAA	Family	623	667	1.1e-16	62.0	AUX/IAA family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922635.1
TACAACTTTTTATTACAATATTATAATATAAAAATGAAGAGTAAAGAAACATGTAATGCTAATCATTCCACAAGTCAACCCGGGTTAAGAATTAACTCAATGAAAGGGTACTAATAAAGTGGAAGAAACCTGATTTATTGTCAAAATTTCAGCAAGAAAGAAGTGGGAGGAGGAGAACATTTATTTGTATGTATCATGTACGTATAGAGAGAGAAAAGGAGTGAGAAGGGGGTTTTGGGATTTGGTAACGTTGGATTCAG...

XM_057922633.1
TACAACTTTTTATTACAATATTATAATATAAAAATGAAGAGTAAAGAAACATGTAATGCTAATCATTCCACAAGTCAACCCGGGTTAAGAATTAACTCAATGAAAGGGTACTAATAAAGTGGAAGAAACCTGATTTATTGTCAAAATTTCAGCAAGAAAGAAGTGGGAGGAGGAGAACATTTATTTGTATGTATCATGTACGTATAGAGAGAGAAAAGGAGTGAGAAGGGGGTTTTGGGATTTGGTAACGTTGGATTCAG...

CDS

2 records

下载 CDS FASTA

LOC130997344
ATGGCGCATGCTGATGGCCTGATAAGAGGAGGCTCTCATGAAAGAGGTGTGGGGAGTAATGATCTGTACACAGAACTATGGAAGGCATGTGCAGGGCCTTTGGTGGATGTTCCTTGTGTCCGAGAAAGAGTTTACTACTTTCCTCAAGGTCACATGGAACAATTAGAGGCATCAACAAATCAGGAACTGAATCAACAAATCCCTCACTTCAATCTCCCTCCGAAGATCCTTTGTCGTGTTGTTCACATTCAGTTGAAGGC...

Protein

2 records

下载 Protein FASTA

XP_057778616.1
MAHADGLIRGGSHERGVGSNDLYTELWKACAGPLVDVPCVRERVYYFPQGHMEQLEASTNQELNQQIPHFNLPPKILCRVVHIQLKAEPETDEVYAQITLQPEPDQSEPTSPDPSPPDLPKPAVQSFCKILTASDTSTHGGFSVLRKHANECLPPLDMTQPTPTQDLAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDCFVFLRGDNGELRVGIRHLARHQSSMPPSVISSQSMHLGVLATASHAITTQ...

XP_057778618.1
MAHADGLIRGGSHERGVGSNDLYTELWKACAGPLVDVPCVRERVYYFPQGHMEQLEASTNQELNQQIPHFNLPPKILCRVVHIQLKAEPETDEVYAQITLQPEPDQSEPTSPDPSPPDLPKPAVQSFCKILTASDTSTHGGFSVLRKHANECLPPLDMTQPTPTQDLAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDCFVFLRGDNGELRVGIRHLARHQSSMPPSVISSQSMHLGVLATASHAITTQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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