Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002727`

染色体: Chr08 坐标: 26921018-26924307 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002727`
名称	SmilChr08G002727
描述	UV-stimulated scaffold protein A homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	26921018 - 26924307 / `+`

ID 对照

NCBI Gene ID	`LOC130997355`
GeneID	`130997355`
locus_tag	`-`
NCBI Name	`LOC130997355`
原始查询	`LOC130997355`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UV-stimulated scaffold protein A homolog
产物	UV-stimulated scaffold protein A homolog
Arabidopsis	`AT3G61800` (AT3G61800) ENTH/VHS protein [Source:NCBI gene (formerly Entrezgene);Acc:825353] identity=50.8; qcov=0.993; evalue=0; confidence=high
Rice	`Os02g0293800` - identity=45.6; qcov=0.742; evalue=3.49e-127; confidence=high
GO	GO:0000993 (RNA polymerase II complex binding); GO:0005694 (chromosome); GO:0006283 (transcription-coupled nucleotide-excision repair); GO:0009411 (response to UV)
KEGG	smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF09740 (DUF2043); PF20867 (UVSSA_N)
InterPro	-
eggNOG	-
NR	GeneID:130997355

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778630.1`
2	Chromosome	染色体	0.20000	`XP_057778630.1`
3	Centromere	着丝粒	0.00000	`XP_057778630.1`
4	Chromatin	染色质	0.00000	`XP_057778630.1`
5	Telomere	端粒	0.00000	`XP_057778630.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:26921187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B53
`Chr8:26921322`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:26921376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:26922223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr8:26922451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B41,C15
`Chr8:26922482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr8:26922617`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B46,B51,B60,C35
`Chr8:26922831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B115,B78,C45,C80,D4
`Chr8:26922953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:26922954`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:26923290`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:26923304`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778630.1

674 aa

337

674

UVSSA_N

DUF2043

PF20867 UVSSA_N 33-166 aa PF09740 DUF2043 420-522 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778630.1`	Pfam	`PF20867`	UVSSA_N	Repeat	33	166	1.3e-36	126.0	UVSSA N-terminal domain
`XP_057778630.1`	Pfam	`PF09740`	DUF2043	Family	420	522	1.9e-31	109.6	Uncharacterized conserved protein (DUF2043)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009093058.1
ACATATACCTACAAGTCATATGGTGTCCAAGGATATAATCGTCAAATAAAGCTGGGGCTTAGCCAAACAGTGAGAGAAATTGAATTCATTCACATTTCACGAAAAATACACAAAATCGGATGCCGCCGGGAAAAAAGACCAACGATAAACTGACTAGAAATCCACATCGCGACGCCGTGATGGCGGAGGAGAGGGAGAAGGCGGCGGCGATGGCTTTGATAGAGAGAGCCGTCGAATCCACGGCAGCGGAGGTGGATCCG...

XM_057922647.1
ACATATACCTACAAGTCATATGGTGTCCAAGGATATAATCGTCAAATAAAGCTGGGGCTTAGCCAAACAGTGAGAGAAATTGAATTCATTCACATTTCACGAAAAATACACAAAATCGGATGCCGCCGGGAAAAAAGACCAACGATAAACTGACTAGAAATCCACATCGCGACGCCGTGATGGCGGAGGAGAGGGAGAAGGCGGCGGCGATGGCTTTGATAGAGAGAGCCGTCGAATCCACGGCAGCGGAGGTGGATCCG...

CDS

1 records

下载 CDS FASTA

LOC130997355
ATGCCGCCGGGAAAAAAGACCAACGATAAACTGACTAGAAATCCACATCGCGACGCCGTGATGGCGGAGGAGAGGGAGAAGGCGGCGGCGATGGCTTTGATAGAGAGAGCCGTCGAATCCACGGCAGCGGAGGTGGATCCGCGCCTCCTCAAGGCGATCAAATCCGTGGTGCGTAATTCCGACTCGGAGCTCCGTTCCGCCTCCCAAACTCTAATGTCTCTCATGAAGCGAAACCATTCGCAGGTACGGTATCTTGCACT...

Protein

1 records

下载 Protein FASTA

XP_057778630.1
MPPGKKTNDKLTRNPHRDAVMAEEREKAAAMALIERAVESTAAEVDPRLLKAIKSVVRNSDSELRSASQTLMSLMKRNHSQVRYLALLIVDELFMRSKLFRSLLVENLDLFLSLSIGFRRNHPLPPPASVASLLRSKSIEFLEKWNDSFGIHYRQLRLGYDYLKNTLRFQFPNLQANAARIQQERREREMRTRDILLKKFESLKANFSSIKEEIQINIDEIDECLGILRMKDDDMQFDPVDNEEMEEFRNSELHQIRLDS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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