当前解析结果
SmilChr08G002729| 统一新 Gene ID | SmilChr08G002729 |
|---|---|
| 名称 | SmilChr08G002729 |
| 描述 | uncharacterized SmilChr08G002729 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26930574 - 26935533 / + |
| NCBI Gene ID | LOC130997358 |
|---|---|
| GeneID | 130997358 |
| locus_tag | - |
| NCBI Name | LOC130997358 |
| 原始查询 | LOC130997358 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | embryo defective 1703 [Source:NCBI gene (formerly Entrezgene);Acc:825351]; symbol=emb1703; hit=AT3G61780; species=arabidopsis; confidence=low |
| 产物 | embryo defective 1703 [Source:NCBI gene (formerly Entrezgene);Acc:825351]; symbol=emb1703; hit=AT3G61780; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G61780 (emb1703)embryo defective 1703 [Source:NCBI gene (formerly Entrezgene);Acc:825351] identity=63.6; qcov=0.412; evalue=0; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997358 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057778632.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057778632.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057778632.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057778632.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778632.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26930719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:26930739 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:26930805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B76,B94,C56,C64,C66 |
Chr8:26930816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B113,B25,C61 |
Chr8:26930830 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B113,B25,C61 |
Chr8:26930907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr8:26931033 |
ATG |
A |
2bp_deletion | frameshift_variant | 2 | A25,B54 |
Chr8:26931033 |
ATG |
A |
2bp_deletion | CDS_variant | 2 | A25,B54 |
Chr8:26931039 |
A |
AAG |
2bp_insertion | frameshift_variant | 2 | A25,B54 |
Chr8:26931039 |
A |
AAG |
2bp_insertion | CDS_variant | 2 | A25,B54 |
Chr8:26931111 |
T |
TC |
1bp_insertion | frameshift_variant | 51 | A10,A18,A25,B10,B109,B115,B119,B123,B134,B139,B18,B21,B22,B28,B33,B40,B41,B42,B43,B44,B5,B51,B52,B54,B57,B68,B8,B83,B85,B86,B87,B89,B95,C12,C13,C21,C26,C27,C3,C31,C48,C49,C5,C53,C54,C58,C59,C71,C73,C81,D4 |
Chr8:26931154 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | C21,C39,C40 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。