Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002742`

染色体: Chr08 坐标: 27024950-27028113 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002742`
名称	SmilChr08G002742
描述	rhodanese-like domain-containing protein 4, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	27024950 - 27028113 / `+`

ID 对照

NCBI Gene ID	`LOC130997369`
GeneID	`130997369`
locus_tag	`-`
NCBI Name	`LOC130997369`
原始查询	`LOC130997369`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rhodanese-like domain-containing protein 4, chloroplastic
产物	rhodanese-like domain-containing protein 4%2C chloroplastic
Arabidopsis	`AT4G01050` (TROL) thylakoid rhodanese-like protein [Source:NCBI gene (formerly Entrezgene);Acc:827921] identity=55; qcov=0.987; evalue=4.89e-118; confidence=high
Rice	`Os02g0257300` (OsStr12) - identity=46.4; qcov=0.867; evalue=1.75e-85; confidence=high
GO	-
KEGG	-
Pfam	PF28616 (STR4_N); PF30980 (STR4_M)
InterPro	-
eggNOG	-
NR	GeneID:130997369

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057778640.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057778640.1`
3	Chloroplast thylakoid membrane	类囊体膜	1.00000	`XP_057778640.1`
4	Nucleus	细胞核	0.00000	`XP_057778640.1`
5	Chromosome	染色体	0.00000	`XP_057778640.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:27025235`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,A25,B37,C76,D8
`Chr8:27025444`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A2,B7,B80
`Chr8:27025567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr8:27025572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B23,B55,C60
`Chr8:27027088`	`TC`	`T`	1bp_deletion	frameshift_variant	3	A2,B7,B80
`Chr8:27027088`	`TC`	`T`	1bp_deletion	CDS_variant	3	A2,B7,B80
`Chr8:27027092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B102,B105,B11
`Chr8:27027563`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr8:27027578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr8:27027649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,B89

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778640.1

398 aa

199

398

STR4_M

STR4_N

PF30980 STR4_M 125-248 aa PF28616 STR4_N 293-320 aa

XP_057778641.1

383 aa

192

383

STR4_M

STR4_N

PF30980 STR4_M 125-248 aa PF28616 STR4_N 293-320 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778640.1`	Pfam	`PF30980`	STR4_M	Domain	125	248	5.1e-64	214.5	STR4 middle domain
`XP_057778640.1`	Pfam	`PF28616`	STR4_N	Domain	293	320	1.8e-15	57.0	STR4 N-terminal domain
`XP_057778641.1`	Pfam	`PF30980`	STR4_M	Domain	125	248	4.7e-64	214.6	STR4 middle domain
`XP_057778641.1`	Pfam	`PF28616`	STR4_N	Domain	293	320	1.7e-15	57.0	STR4 N-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922658.1
GATGGTTTCTCAGCCACACAATCACAAAACAGCTGATCATCTACTGCCCCACGTGGCAACCCATAATTGGTCAGCCCACTCCACCTCAGCGCTCCACCCTCCCAAAAAAGCTCCTCTCTTTCAGATTTTGCAGAGCCTTTGGAGCTCAACAACTAGCAGGCGAAATGGAAGCCCTCAACGCAGTTGGAGTCAAACCGCTCCCAATTCTCGCCAAACAAACCGACCCCAACAAATATCCCACCCTTTCTCCCGTCAAAATT...

XM_057922657.1
CGCTCCACCCTCCCAAAAAAGCTCCTCTCTTTCAGATTTTGCAGAGCCTTTGGAGCTCAACAACTAGCAGGCGAAATGGAAGCCCTCAACGCAGTTGGAGTCAAACCGCTCCCAATTCTCGCCAAACAAACCGACCCCAACAAATATCCCACCCTTTCTCCCGTCAAAATTCAATCTTTTCCCAGCTGCGCCACCTCGAATCGCGCAATCTCCACTTCAGGAGCTCTCAACGGCGGTTTAGCGCTGCTGTCTTCGTTTCT...

CDS

2 records

下载 CDS FASTA

LOC130997369
ATGGAAGCCCTCAACGCAGTTGGAGTCAAACCGCTCCCAATTCTCGCCAAACAAACCGACCCCAACAAATATCCCACCCTTTCTCCCGTCAAAATTCAATCTTTTCCCAGCTGCGCCACCTCGAATCGCGCAATCTCCACTTCAGGAGCTCTCAACGGCGGTTTAGCGCTGCTGTCTTCGTTTCTGAGCCCTAATTTAGCTGAAGCGTTGACATACGACGAAGCCCTGCGGCAGTCCGATTTCGACGTCGGTGGAGCTCT...

Protein

2 records

下载 Protein FASTA

XP_057778640.1
MEALNAVGVKPLPILAKQTDPNKYPTLSPVKIQSFPSCATSNRAISTSGALNGGLALLSSFLSPNLAEALTYDEALRQSDFDVGGALDGLIRFAAENPIIAGGGAAVVAVPVAVAWLLLGKAKPWGVESAKTAYAKLGDDANAQLLDIRSTAEIKQAGSPNIRGLKKKPVVVSYNADDKLGFLKKLNLKFKEPENTTLFVLDKFDGSSELVAELVTSNGFKAAYAIRDGAEGSRGWVNSGLPWIPPTTIFDINNVIDTLG...

XP_057778641.1
MEALNAVGVKPLPILAKQTDPNKYPTLSPVKIQSFPSCATSNRAISTSGALNGGLALLSSFLSPNLAEALTYDEALRQSDFDVGGALDGLIRFAAENPIIAGGGAAVVAVPVAVAWLLLGKAKPWGVESAKTAYAKLGDDANAQLLDIRSTAEIKQAGSPNIRGLKKKPVVVSYNADDKLGFLKKLNLKFKEPENTTLFVLDKFDGSSELVAELVTSNGFKAAYAIRDGAEGSRGWVNSGLPWIPPTTIFDINNVIDTLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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