Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002784`

染色体: Chr08 坐标: 27530809-27534086 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002784`
名称	SmilChr08G002784
描述	uncharacterized SmilChr08G002784
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	27530809 - 27534086 / `+`

ID 对照

NCBI Gene ID	`LOC130997405`
GeneID	`130997405`
locus_tag	`-`
NCBI Name	`LOC130997405`
原始查询	`LOC130997405`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541]; symbol=AT3G44190; hit=AT3G44190; species=arabidopsis; confidence=high
产物	FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541]; symbol=AT3G44190; hit=AT3G44190; species=arabidopsis; confidence=high
Arabidopsis	`AT3G44190` (AT3G44190) FAD/NAD(P)-binding oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823541] identity=61.1; qcov=0.983; evalue=2.84e-160; confidence=high
Rice	`Os02g0150300` - identity=59.4; qcov=0.902; evalue=1.12e-143; confidence=high
GO	GO:0004174 (electron-transferring-flavoprotein dehydrogenase activity); GO:0005737 (cytoplasm); GO:0050660 (flavin adenine dinucleotide binding)
KEGG	-
Pfam	PF00070 (Pyr_redox); PF07992 (Pyr_redox_2)
InterPro	-
eggNOG	-
NR	GeneID:130997405

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057778681.1`
2	Mitochondrion	线粒体	0.80000	`XP_057778681.1`
3	Cytoplasm	细胞质	0.40000	`XP_057778681.1`
4	Lipid droplet	脂滴	0.40000	`XP_057778681.1`
5	Mitochondrion membrane	线粒体膜	0.20000	`XP_057778681.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:27531285`	`T`	`TA`	1bp_insertion	frameshift_variant	13	A21,A7,A9,B110,B30,B36,B66,B78,B81,B83,C59,C87,D10
`Chr8:27531372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B91,C22,C4
`Chr8:27532365`	`A`	`AGC`	2bp_insertion	frameshift_variant	49	A15,A21,A7,A9,B1,B118,B122,B123,B126,B134,B137,B16,B17,B2,B21,B22,B24,B25,B30,B33,B34,B36,B40,B47,B66,B68,B70,B78,B79,B80,B81,B83,B93,B98,C14,C15,C27,C28,C45,C51,C53,C59,C60,C82,C87,D10,D4,D8,D9
`Chr8:27533096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:27533268`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B21
`Chr8:27533268`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B21
`Chr8:27533291`	`AGG`	`A`	2bp_deletion	frameshift_variant	1	B21
`Chr8:27533291`	`AGG`	`A`	2bp_deletion	CDS_variant	1	B21
`Chr8:27533298`	`CTT`	`C`	2bp_deletion	frameshift_variant	1	B21
`Chr8:27533298`	`CTT`	`C`	2bp_deletion	CDS_variant	1	B21
`Chr8:27533302`	`T`	`TTC`	2bp_insertion	frameshift_variant	1	B21
`Chr8:27533302`	`T`	`TTC`	2bp_insertion	CDS_variant	1	B21

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778681.1

358 aa

179

358

Pyr_redox_2

Pyr_redox

PF07992 Pyr_redox_2 9-285 aa PF00070 Pyr_redox 133-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778681.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	9	285	1.7e-31	110.5	Pyridine nucleotide-disulphide oxidoreductase
`XP_057778681.1`	Pfam	`PF00070`	Pyr_redox	Domain	133	198	1.8e-12	48.3	Pyridine nucleotide-disulphide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922698.1
ATGTATTAAATGAATCCGCTGCTAGGTCACATCATCATGTTCATGTAGCAAAATATTTGAGTCAAAATAATCATCTCTAAAATTTTAATTTATAATATTGATTTTTATGTAACGAACTGTTTCCACGACTCGGTGACTTCGTTAATGGCGGCCGTTTTAATATTGCCTAGACTCTGCGTTCCTATTTAAGAGGGGGCATTGGGCGCTTCTCTTCTTGCTGTGCTGTGAGATTGTTTCATTTCGACACAATTTGCTTGGAA...

CDS

1 records

下载 CDS FASTA

LOC130997405
ATGGATAAATTGCTCGGAGATAAAAAGAAGGTTGCGATTGTCGGCGGCGGAGTGGCCGGCTCGGGGTTGGCCAAGAGCCTTCAAGATCATGCCGATGTCTATCTTATCGATCCGAAGGAATATTATGAGATCGCTTGGGCTGAAATGAGAGCTACTGTTGAACCATCATTTGCAGAAAGAACATTGATTAATCATGCAGAGTACCTTTCCAAGGCTCATGTTATTACATCTGCTGCAACTAATATCACAGAAAATGAAGT...

Protein

1 records

下载 Protein FASTA

XP_057778681.1
MDKLLGDKKKVAIVGGGVAGSGLAKSLQDHADVYLIDPKEYYEIAWAEMRATVEPSFAERTLINHAEYLSKAHVITSAATNITENEVTTADGRCVGFDYLVIATGHAGGPEFTKSEKIHKYEAEHDKIKAAKSVLIVGGGPSGVELAAEIIFAFPDKKVTLVHKGPRLLEFIGEKAGKKALNWLTSKKVEVILGQSVDLESGSDGVFHTSGGETIHADCHYLCIRKPLSSSWLRETCVRDSLDAQGSVMVDKQLRVKGHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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