Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002796`

染色体: Chr08 坐标: 27663404-27668161 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002796`
名称	SmilChr08G002796
描述	calcium-dependent protein kinase 1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	27663404 - 27668161 / `-`

ID 对照

NCBI Gene ID	`LOC130997414`
GeneID	`130997414`
locus_tag	`-`
NCBI Name	`LOC130997414`
原始查询	`LOC130997414`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-dependent protein kinase 1-like
产物	calcium-dependent protein kinase 1-like
Arabidopsis	`AT5G04870` (CPK1) calcium dependent protein kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:830366] identity=74.4; qcov=1.08; evalue=0; confidence=high
Rice	`Os03g0788500` (CDPK10) - identity=71.3; qcov=1.05; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12763 (EH); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130997414

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057778700.1`
2	Cytosol	细胞质基质	0.40000	`XP_057778700.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057778700.1`
4	Cytoplasm	细胞质	0.20000	`XP_057778701.1`
5	Trans-golgi network	Trans-golgi network	0.20000	`XP_057778700.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:27663640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:27663748`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B125,B26,C21,C36,C77
`Chr8:27663906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:27663924`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:27663993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B108
`Chr8:27664293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B100,B32,C1,C61,C85
`Chr8:27664371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C15
`Chr8:27665458`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr8:27665599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,B64,C72
`Chr8:27665611`	`T`	`TA`	1bp_insertion	frameshift_variant	41	A13,A9,B108,B124,B125,B128,B134,B136,B140,B2,B22,B36,B4,B46,B49,B53,B54,B57,B6,B63,B91,B98,C10,C12,C16,C17,C27,C33,C38,C40,C42,C46,C49,C53,C56,C58,C62,C79,C83,D10,D9
`Chr8:27665661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr8:27665790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778700.1

611 aa

306

611

PK_Tyr_Ser-Thr

Pkinase

EF-hand_8

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF07714 PK_Tyr_Ser-Thr 109-325 aa PF00069 Pkinase 109-404 aa PF13833 EF-hand_8 436-473 aa PF13202 EF-hand_5 452-474 aa PF00036 EF-hand_1 452-478 aa PF13405 EF-hand_6 452-480 aa PF13499 EF-hand_7 452-511 aa PF13833 EF-hand_8 464-512 aa PF13202 EF-hand_5 488-509 aa PF13833 EF-hand_8 513-544 aa PF13499 EF-hand_7 522-583 aa PF00036 EF-hand_1 525-548 aa PF13405 EF-hand_6 525-551 aa PF13202 EF-hand_5 527-546 aa PF12763 EH 527-583 aa PF13833 EF-hand_8 556-584 aa PF13202 EF-hand_5 558-582 aa PF00036 EF-hand_1 558-584 aa

XP_057778701.1

573 aa

286

573

PK_Tyr_Ser-Thr

Pkinase

EF-hand_8

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_5

EF-hand_1

PF07714 PK_Tyr_Ser-Thr 109-360 aa PF00069 Pkinase 109-366 aa PF13833 EF-hand_8 398-435 aa PF13202 EF-hand_5 414-436 aa PF00036 EF-hand_1 414-440 aa PF13405 EF-hand_6 414-442 aa PF13499 EF-hand_7 414-473 aa PF13833 EF-hand_8 426-474 aa PF13202 EF-hand_5 450-471 aa PF13833 EF-hand_8 475-506 aa PF13499 EF-hand_7 484-545 aa PF00036 EF-hand_1 487-510 aa PF13405 EF-hand_6 487-513 aa PF13202 EF-hand_5 489-508 aa PF12763 EH 489-545 aa PF13833 EF-hand_8 518-546 aa PF13202 EF-hand_5 520-544 aa PF00036 EF-hand_1 520-546 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778700.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	109	325	1.4e-24	87.6	Protein tyrosine and serine/threonine kinase
`XP_057778700.1`	Pfam	`PF00069`	Pkinase	Domain	109	404	2.5e-74	250.7	Protein kinase domain
`XP_057778700.1`	Pfam	`PF13833`	EF-hand_8	Domain	436	473	2.8e-20	72.5	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF13202`	EF-hand_5	Domain	452	474	6.6e-25	86.1	EF hand
`XP_057778700.1`	Pfam	`PF00036`	EF-hand_1	Domain	452	478	1e-33	113.1	EF hand domain
`XP_057778700.1`	Pfam	`PF13405`	EF-hand_6	Domain	452	480	3.3e-27	92.3	EF-hand domain
`XP_057778700.1`	Pfam	`PF13499`	EF-hand_7	Domain	452	511	4e-31	107.9	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF13833`	EF-hand_8	Domain	464	512	2.8e-20	72.5	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF13202`	EF-hand_5	Domain	488	509	6.6e-25	86.1	EF hand
`XP_057778700.1`	Pfam	`PF13833`	EF-hand_8	Domain	513	544	2.8e-20	72.5	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF13499`	EF-hand_7	Domain	522	583	4e-31	107.9	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF00036`	EF-hand_1	Domain	525	548	1e-33	113.1	EF hand domain
`XP_057778700.1`	Pfam	`PF13405`	EF-hand_6	Domain	525	551	3.3e-27	92.3	EF-hand domain
`XP_057778700.1`	Pfam	`PF13202`	EF-hand_5	Domain	527	546	6.6e-25	86.1	EF hand
`XP_057778700.1`	Pfam	`PF12763`	EH	Domain	527	583	9.3e-10	39.1	EH domain
`XP_057778700.1`	Pfam	`PF13833`	EF-hand_8	Domain	556	584	2.8e-20	72.5	EF-hand domain pair
`XP_057778700.1`	Pfam	`PF13202`	EF-hand_5	Domain	558	582	6.6e-25	86.1	EF hand
`XP_057778700.1`	Pfam	`PF00036`	EF-hand_1	Domain	558	584	1e-33	113.1	EF hand domain
`XP_057778701.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	109	360	5.1e-26	92.3	Protein tyrosine and serine/threonine kinase
`XP_057778701.1`	Pfam	`PF00069`	Pkinase	Domain	109	366	1.6e-77	261.1	Protein kinase domain
`XP_057778701.1`	Pfam	`PF13833`	EF-hand_8	Domain	398	435	2e-20	73.0	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF13202`	EF-hand_5	Domain	414	436	4.9e-25	86.5	EF hand
`XP_057778701.1`	Pfam	`PF00036`	EF-hand_1	Domain	414	440	7.3e-34	113.5	EF hand domain
`XP_057778701.1`	Pfam	`PF13405`	EF-hand_6	Domain	414	442	2.4e-27	92.7	EF-hand domain
`XP_057778701.1`	Pfam	`PF13499`	EF-hand_7	Domain	414	473	3.2e-31	108.2	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF13833`	EF-hand_8	Domain	426	474	2e-20	73.0	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF13202`	EF-hand_5	Domain	450	471	4.9e-25	86.5	EF hand
`XP_057778701.1`	Pfam	`PF13833`	EF-hand_8	Domain	475	506	2e-20	73.0	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF13499`	EF-hand_7	Domain	484	545	3.2e-31	108.2	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF00036`	EF-hand_1	Domain	487	510	7.3e-34	113.5	EF hand domain
`XP_057778701.1`	Pfam	`PF13405`	EF-hand_6	Domain	487	513	2.4e-27	92.7	EF-hand domain
`XP_057778701.1`	Pfam	`PF13202`	EF-hand_5	Domain	489	508	4.9e-25	86.5	EF hand
`XP_057778701.1`	Pfam	`PF12763`	EH	Domain	489	545	8e-10	39.3	EH domain
`XP_057778701.1`	Pfam	`PF13833`	EF-hand_8	Domain	518	546	2e-20	73.0	EF-hand domain pair
`XP_057778701.1`	Pfam	`PF13202`	EF-hand_5	Domain	520	544	4.9e-25	86.5	EF hand
`XP_057778701.1`	Pfam	`PF00036`	EF-hand_1	Domain	520	546	7.3e-34	113.5	EF hand domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922718.1
CTGTCAAAAATGCGAATTTTTATAGCAATAAAAACGCGTTTTTTCCGAGAGGTTGTCTGACTAAATGCATCAATCTGCCACAGCATATAAATAAACGGACAAATACTCGCATGTTAATTCTTTTTTTTGCTCGTCTCGCATGTTAATTCTTGTTCGCATTATTGTTTGTCTCGAGTTTTTTCAGTAATTTAATCCAAGCATCACTTCGCATAATCTAGAGCTAGTGGAGGACTGGATGAAACCTGAGATTCATCAAGATC...

XM_057922717.1
GTTGTCTGACTAAATGCATCAATCTGCCACAGCATATAAATAAACGGACAAATACTCGCATGTTAATTCTTTTTTTTGCTCGTCTCGCATGTTAATTCTTGTTCGCATTATTGTTTGTCTCGAGTTTTTTCAGTAATTTAATCCAAGCATCACTTCGCATAATCTAGAGCTAGTGGAGGACTGGATGAAACCTGAGATTCATCAAGATCTCAACTTTTTCCGCAGTTTGACCCTTGATTTTGCAGCGAGTTCTTGTTGAA...

CDS

2 records

下载 CDS FASTA

LOC130997414
ATGGGGAACACTTGTGTTGGACCGGGAATAACGAAAAACAACTTCATTCAATCTGTCTCCGCTGCCATGTGGCGGACCCCAGTCCCGGAGAGTACTAATGGCTCCTCTGTCAATGGGGGGAGTGTCAAGAACGAGGCTCAGGTGGAGCCGGAGTCGCCCATGCCAGTGCAAAACACGCCACCGGAGCAGGTGACAATGCCGAAGCCTGAGGTGAAGCAGGAGGAGAAGGTGAATGTTAAGAAACCGATGAAGAGGAATAC...

Protein

2 records

下载 Protein FASTA

XP_057778700.1
MGNTCVGPGITKNNFIQSVSAAMWRTPVPESTNGSSVNGGSVKNEAQVEPESPMPVQNTPPEQVTMPKPEVKQEEKVNVKKPMKRNTSAGLRTDSVLQRKTGNLKEFFTMGKKLGQGQFGTTFLCVEKSTGTQYACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYSERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLLVDQKEDSLLKTIDFGLSMFF...

XP_057778701.1
MGNTCVGPGITKNNFIQSVSAAMWRTPVPESTNGSSVNGGSVKNEAQVEPESPMPVQNTPPEQVTMPKPEVKQEEKVNVKKPMKRNTSAGLRTDSVLQRKTGNLKEFFTMGKKLGQGQFGTTFLCVEKSTGTQYACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDAVAVHVVMELCAGGELFDRIIQRGHYSERKAAELTRTIVGVVEACHSLGVMHRDLKPENFLLVDQKEDSLLKTIDFGLSMFF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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