当前解析结果
SmilChr08G002800| 统一新 Gene ID | SmilChr08G002800 |
|---|---|
| 名称 | SmilChr08G002800 |
| 描述 | myosin-11-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 27748836 - 27762546 / - |
| NCBI Gene ID | LOC130997419 |
|---|---|
| GeneID | 130997419 |
| locus_tag | - |
| NCBI Name | LOC130997419 |
| 原始查询 | LOC130997419 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | myosin-11-like |
| 产物 | myosin-11-like |
| Arabidopsis | AT1G54560 (XIE)Myosin family protein with Dil domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841898] identity=80.1; qcov=0.999; evalue=0; confidence=high |
| Rice | Os06g0488200- identity=79.3; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0000146 (microfilament motor activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0007015 (actin filament organization); GO:0015629 (actin cytoskeleton); GO:0016459 (myosin complex); GO:0030050 (vesicle transport along actin filament); GO:0031982 (vesicle); GO:0051015 (actin filament binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00063 (Myosin_head); PF00612 (IQ); PF01843 (DIL); PF02736 (Myosin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997419 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778710.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057778710.1 |
| 3 | Phragmoplast | Phragmoplast | 0.20000 | XP_057778710.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057778710.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057778710.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:27750722 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,D2 |
Chr8:27750754 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:27752214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr8:27753067 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C8,D7 |
Chr8:27755761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:27755947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr8:27756266 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr8:27756278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:27756312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr8:27759460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr8:27761045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C4 |
Chr8:27761123 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778710.1PF02736
Myosin_N 11-60 aa
PF00063
Myosin_head 69-725 aa
PF00612
IQ 837-857 aa
PF01843
DIL 1349-1453 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778710.1 |
Pfam | PF02736 |
Myosin_N | Domain | 11 | 60 | 4e-08 | 33.5 | Myosin N-terminal SH3-like domain |
XP_057778710.1 |
Pfam | PF00063 |
Myosin_head | Domain | 69 | 725 | 4.8e-254 | 845.4 | Myosin head (motor domain) |
XP_057778710.1 |
Pfam | PF00612 |
IQ | Motif | 837 | 857 | 5.4e-09 | 35.8 | IQ calmodulin-binding motif |
XP_057778710.1 |
Pfam | PF01843 |
DIL | Repeat | 1349 | 1453 | 9.3e-30 | 103.6 | DIL domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。