当前解析结果
SmilChr01G001023| 统一新 Gene ID | SmilChr01G001023 |
|---|---|
| 名称 | SmilChr01G001023 |
| 描述 | uncharacterized SmilChr01G001023 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 21391468 - 21395847 / - |
| NCBI Gene ID | LOC130997442 |
|---|---|
| GeneID | 130997442 |
| locus_tag | - |
| NCBI Name | LOC130997442 |
| 原始查询 | LOC130997442 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=medium |
| 产物 | hit=Os04g0191000; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=38.6; qcov=0.101; evalue=8.98e-27; confidence=weak |
| Rice | Os04g0191000- identity=43.5; qcov=0.495; evalue=9.79e-151; confidence=medium |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF30901 (PEG10-RTL1_C-capsid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997442 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057778776.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057778776.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057778776.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057778776.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057778776.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:21391488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr1:21391506 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr1:21391506 |
CT |
C |
1bp_deletion | CDS_variant | 1 | B104 |
Chr1:21391981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:21391988 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,B16 |
Chr1:21392050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B70,B76 |
Chr1:21392351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr1:21392875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr1:21392917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B16,C75 |
Chr1:21393377 |
TAC |
T |
2bp_deletion | frameshift_variant | 2 | B71,C62 |
Chr1:21393377 |
TAC |
T |
2bp_deletion | CDS_variant | 2 | B71,C62 |
Chr1:21393410 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A21 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778776.1PF03732
PEG10_N-capsid 84-166 aa
PF30901
PEG10-RTL1_C-capsid 176-249 aa
PF00098
zf-CCHC 314-331 aa
PF00078
RVT_1 685-843 aa
PF17919
RT_RNaseH_2 907-1001 aa
PF17917
RT_RNaseH 932-1031 aa
PF17921
Integrase_H2C2 1112-1168 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778776.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 84 | 166 | 1.7e-19 | 70.6 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057778776.1 |
Pfam | PF30901 |
PEG10-RTL1_C-capsid | Domain | 176 | 249 | 4.5e-07 | 30.5 | PEG10/RTL1, C-terminal capsid-like domain |
XP_057778776.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 314 | 331 | 2.5e-05 | 24.9 | Zinc knuckle |
XP_057778776.1 |
Pfam | PF00078 |
RVT_1 | Domain | 685 | 843 | 1.2e-42 | 146.8 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057778776.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 907 | 1001 | 1.5e-33 | 115.6 | RNase H-like domain found in reverse transcriptase |
XP_057778776.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 932 | 1031 | 1.3e-32 | 112.8 | RNase H-like domain found in reverse transcriptase |
XP_057778776.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1112 | 1168 | 6.6e-18 | 65.3 | Integrase zinc binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。