Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002857`

染色体: Chr08 坐标: 28410666-28414344 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002857`
名称	SmilChr08G002857
描述	uncharacterized SmilChr08G002857
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	28410666 - 28414344 / `+`

ID 对照

NCBI Gene ID	`LOC130997469`
GeneID	`130997469`
locus_tag	`-`
NCBI Name	`LOC130997469`
原始查询	`LOC130997469`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0891400; species=rice; confidence=high
产物	hit=Os01g0891400; species=rice; confidence=high
Arabidopsis	`AT4G32175` (AT4G32175) PNAS-3-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829350] identity=70.8; qcov=0.979; evalue=1.31e-125; confidence=high
Rice	`Os01g0891400` - identity=72.4; qcov=0.963; evalue=1.06e-125; confidence=high
GO	GO:0000176 (nuclear exosome (RNase complex)); GO:0000177 (cytoplasmic exosome (RNase complex)); GO:0000467 (exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0034427 (GO:0034427); GO:0034475 (U4 snRNA 3'-end processing); GO:0043928 (GO:0043928); GO:0071034 (CUT catabolic process); GO:0071035 (nuclear polyadenylation-dependent rRNA catabolic process); GO:0071038 (TRAMP-dependent tRNA surveillance pathway); GO:0071051 (poly(A)-dependent snoRNA 3'-end processing)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF15985 (KH_6); PF18311 (Rrp40_N); PF21261 (RRP40_N_mamm); PF21262 (RRP40_S1)
InterPro	-
eggNOG	-
NR	GeneID:130997469

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057778765.1`
2	Nucleolus	核仁	1.00000	`XP_057778765.1`
3	Cytoplasm	细胞质	0.60000	`XP_057778764.1`
4	Cytosol	细胞质基质	0.40000	`XP_057778764.1`
5	Chloroplast	叶绿体	0.40000	`XP_057778764.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:28411312`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B79,C23
`Chr8:28411323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B129,B49,C20,C53
`Chr8:28412359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,B107
`Chr8:28412676`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B80,C18,C48
`Chr8:28413666`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B79,C23,C39
`Chr8:28413812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:28414070`	`C`	`CG`	1bp_insertion	frameshift_variant	3	B80,C18,C48
`Chr8:28414070`	`C`	`CG`	1bp_insertion	CDS_variant	3	B80,C18,C48
`Chr8:28414089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,C15
`Chr8:28414123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,B7,B80
`Chr8:28414271`	`AT`	`A`	1bp_deletion	CDS_variant	5	B16,B2,B26,C77,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778764.1

275 aa

138

275

RRP40_N_mamm

Rrp40_N

RRP40_S1

KH_6

PF21261 RRP40_N_mamm 28-67 aa PF18311 Rrp40_N 34-71 aa PF21262 RRP40_S1 72-154 aa PF15985 KH_6 159-203 aa

XP_057778765.1

241 aa

120

241

RRP40_N_mamm

Rrp40_N

RRP40_S1

KH_6

PF21261 RRP40_N_mamm 28-67 aa PF18311 Rrp40_N 34-71 aa PF21262 RRP40_S1 72-154 aa PF15985 KH_6 159-207 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778764.1`	Pfam	`PF21261`	RRP40_N_mamm	Domain	28	67	3.6e-08	33.7	Mammalian exosome complex component RRP40, N-terminal
`XP_057778764.1`	Pfam	`PF18311`	Rrp40_N	Domain	34	71	1.1e-07	32.1	Exosome complex exonuclease Rrp40 N-terminal domain
`XP_057778764.1`	Pfam	`PF21262`	RRP40_S1	Domain	72	154	3.2e-27	95.0	Exosome complex component RRP40, S1 domain
`XP_057778764.1`	Pfam	`PF15985`	KH_6	Domain	159	203	1.5e-14	54.7	KH domain
`XP_057778765.1`	Pfam	`PF21261`	RRP40_N_mamm	Domain	28	67	2.7e-08	34.2	Mammalian exosome complex component RRP40, N-terminal
`XP_057778765.1`	Pfam	`PF18311`	Rrp40_N	Domain	34	71	5.6e-08	33.1	Exosome complex exonuclease Rrp40 N-terminal domain
`XP_057778765.1`	Pfam	`PF21262`	RRP40_S1	Domain	72	154	2.4e-27	95.4	Exosome complex component RRP40, S1 domain
`XP_057778765.1`	Pfam	`PF15985`	KH_6	Domain	159	207	6.3e-16	59.2	KH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922782.1
GACCCAATATAAGTAAAACAAAGCCCAAAATTATAGCTCTCTCTTCTCTCTCTCTCACTTTCGCGATACGCACAATCACAGAACCCTCTTCCTCGCCCCGCCCCTGAATCCCAGTCTGCCGCGCCGCCTCCCCCTGTCTGCCTCGCCTCCGCCCAAGGTGATTCAAGTTGCAATAAGGTTTGAAAATCAGTTTTCGGCAGATATGGCATTGAAGCCCTCAATGCCTTCTTCGAGCCTTATTGATCAACAAGTGTTTCCAG...

XM_057922781.1
AATATAAGTAAAACAAAGCCCAAAATTATAGCTCTCTCTTCTCTCTCTCTCACTTTCGCGATACGCACAATCACAGAACCCTCTTCCTCGCCCCGCCCCTGAATCCCAGTCTGCCGCGCCGCCTCCCCCTGTCTGCCTCGCCTCCGCCCAAGGTGATTCAAGTTGCAATAAGGTTTGAAAATCAGTTTTCGGCAGATATGGCATTGAAGCCCTCAATGCCTTCTTCGAGCCTTATTGATCAACAAGTGTTTCCAGGAGAT...

CDS

2 records

下载 CDS FASTA

LOC130997469
ATGGCATTGAAGCCCTCAATGCCTTCTTCGAGCCTTATTGATCAACAAGTGTTTCCAGGAGATGTGGTACTGGACCTCTCCAAAATAACTAGTCAAACCATCAAGCTTGGTGGTGGCCTCCGTCAGGATGGTGATGTAATATCTGTTGTGAAAGCCGGAATGCTGAGATTCTCAAAACCAAACAAGTATTGGGTTGAAAGCTCCCACAAACGGTATGTGCCTAGTGCTGGGGATAATGTTCTTGGTATAGTGGTTGATGC...

Protein

2 records

下载 Protein FASTA

XP_057778764.1
MALKPSMPSSSLIDQQVFPGDVVLDLSKITSQTIKLGGGLRQDGDVISVVKAGMLRFSKPNKYWVESSHKRYVPSAGDNVLGIVVDARSDNFFVDIKGPMLAFLPVLAFEGGTRRNIPKFEMGTLLYVRVVKADTGMNPELSCMDATGKAAEYGPLKDGFMFETSTGLSRTLLSSPTSPVLETLGKKIAFEIAVGLNGRVWVSLMFIYVALINFYPLHVFVICLGECFYSINYCTSFKYNHTNGVDEPYTTKNQGGKLAP...

XP_057778765.1
MALKPSMPSSSLIDQQVFPGDVVLDLSKITSQTIKLGGGLRQDGDVISVVKAGMLRFSKPNKYWVESSHKRYVPSAGDNVLGIVVDARSDNFFVDIKGPMLAFLPVLAFEGGTRRNIPKFEMGTLLYVRVVKADTGMNPELSCMDATGKAAEYGPLKDGFMFETSTGLSRTLLSSPTSPVLETLGKKIAFEIAVGLNGRVWVNASTPSIIVLVSNTIIQTESMSPTQQKIRVESLLQKMQQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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