当前解析结果
SmilChr08G002865| 统一新 Gene ID | SmilChr08G002865 |
|---|---|
| 名称 | SmilChr08G002865 |
| 描述 | phospholipase D zeta 1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28484640 - 28497044 / + |
| NCBI Gene ID | LOC130997476 |
|---|---|
| GeneID | 130997476 |
| locus_tag | - |
| NCBI Name | LOC130997476 |
| 原始查询 | LOC130997476 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phospholipase D zeta 1-like |
| 产物 | phospholipase D zeta 1-like |
| Arabidopsis | AT3G16785 (PLDP1)phospholipase D P1 [Source:NCBI gene (formerly Entrezgene);Acc:820932] identity=63.9; qcov=0.99; evalue=0; confidence=high |
| Rice | Os05g0358700 (OsPLDzeta1)- identity=59.1; qcov=0.122; evalue=1.53e-42; confidence=weak |
| GO | GO:0004630 (D-type glycerophospholipase activity); GO:0005886 (plasma membrane); GO:0006654 (phosphatidic acid biosynthetic process); GO:0009395 (phospholipid catabolic process); GO:0035556 (intracellular signal transduction) |
| KEGG | smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil00565 (Ether lipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00614 (PLDc); PF13091 (PLDc_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997476 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057778773.1 |
| 2 | Endosome | 内体 | 0.80000 | XP_057778773.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.40000 | XP_057778773.1 |
| 4 | Cytosol | 细胞质基质 | 0.40000 | XP_057778773.1 |
| 5 | Vesicle | 囊泡 | 0.40000 | XP_057778773.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28484990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,C60,C8,D7 |
Chr8:28486779 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B79,B84,C45,D2 |
Chr8:28486927 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:28487000 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B74,C11,C73 |
Chr8:28489639 |
G |
GC |
1bp_insertion | frameshift_variant | 1 | B25 |
Chr8:28489639 |
G |
GC |
1bp_insertion | CDS_variant | 1 | B25 |
Chr8:28489887 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B15 |
Chr8:28489887 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B15 |
Chr8:28489932 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:28490943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,B73,C39,C83,D3 |
Chr8:28491834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr8:28494279 |
GC |
G |
1bp_deletion | frameshift_variant | 3 | A20,A25,B37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778773.1PF00614
PLDc 375-570 aa
PF00614
PLDc 728-958 aa
PF13091
PLDc_2 879-924 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778773.1 |
Pfam | PF00614 |
PLDc | Domain | 375 | 570 | 5.9e-58 | 197.3 | Phospholipase D |
XP_057778773.1 |
Pfam | PF00614 |
PLDc | Domain | 728 | 958 | 5.9e-58 | 197.3 | Phospholipase D |
XP_057778773.1 |
Pfam | PF13091 |
PLDc_2 | Domain | 879 | 924 | 1.6e-14 | 54.6 | Cardiolipin synthase, PLD-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。