当前解析结果
SmilChr08G002869| 统一新 Gene ID | SmilChr08G002869 |
|---|---|
| 名称 | SmilChr08G002869 |
| 描述 | topless-related protein 3-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28560371 - 28568847 / + |
| NCBI Gene ID | LOC130997478 |
|---|---|
| GeneID | 130997478 |
| locus_tag | - |
| NCBI Name | LOC130997478 |
| 原始查询 | LOC130997478 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | topless-related protein 3-like |
| 产物 | topless-related protein 3-like |
| Arabidopsis | AT5G27030 (TPR3)TOPLESS-related 3 [Source:NCBI gene (formerly Entrezgene);Acc:832761] identity=75.6; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0254100 (OsWD40-12)- identity=74.9; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF17814 (LisH_TPL); PF21359 (zf_topless); PF21889 (TPR1-like_2nd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997478 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057778775.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057778775.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057778775.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057778775.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057778775.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28560708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B23,B55,C60,C8,D7 |
Chr8:28561485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:28561728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B113,B58 |
Chr8:28562475 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A22,B113,B58 |
Chr8:28563029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:28563378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,C77 |
Chr8:28563737 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C9,D8 |
Chr8:28566012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:28566184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:28566201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:28566464 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr8:28566785 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,A11,A21,A3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778775.1PF17814
LisH_TPL 5-34 aa
PF21889
TPR1-like_2nd 37-161 aa
PF21359
zf_topless 164-204 aa
PF00400
WD40 344-377 aa
PF00400
WD40 451-486 aa
PF00400
WD40 490-528 aa
PF00400
WD40 909-944 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778775.1 |
Pfam | PF17814 |
LisH_TPL | Domain | 5 | 34 | 3.9e-12 | 46.3 | LisH-like dimerisation domain |
XP_057778775.1 |
Pfam | PF21889 |
TPR1-like_2nd | Domain | 37 | 161 | 7.2e-63 | 211.2 | TPR1-like, CTLH-containing domain |
XP_057778775.1 |
Pfam | PF21359 |
zf_topless | Domain | 164 | 204 | 5.6e-25 | 87.4 | TOPLESS, zinc finger domain |
XP_057778775.1 |
Pfam | PF00400 |
WD40 | Repeat | 344 | 377 | 1.7e-39 | 133.3 | WD domain, G-beta repeat |
XP_057778775.1 |
Pfam | PF00400 |
WD40 | Repeat | 451 | 486 | 1.7e-39 | 133.3 | WD domain, G-beta repeat |
XP_057778775.1 |
Pfam | PF00400 |
WD40 | Repeat | 490 | 528 | 1.7e-39 | 133.3 | WD domain, G-beta repeat |
XP_057778775.1 |
Pfam | PF00400 |
WD40 | Repeat | 909 | 944 | 1.7e-39 | 133.3 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。