当前解析结果
SmilChr08G002896| 统一新 Gene ID | SmilChr08G002896 |
|---|---|
| 名称 | SmilChr08G002896 |
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 28855638 - 28857743 / + |
| NCBI Gene ID | LOC130997502 |
|---|---|
| GeneID | 130997502 |
| locus_tag | - |
| NCBI Name | LOC130997502 |
| 原始查询 | LOC130997502 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g02370, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g02370%2C mitochondrial-like |
| Arabidopsis | AT1G02370 (AT1G02370)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837735] identity=32.7; qcov=0.962; evalue=9.11e-77; confidence=low |
| Rice | Os01g0301000- identity=32.7; qcov=0.883; evalue=5.41e-70; confidence=low |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997502 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057778812.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778812.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778812.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778812.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778812.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:28855996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:28856657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B33,B49,C32,C68 |
Chr8:28856677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C82 |
Chr8:28856764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:28856911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:28856935 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:28857190 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C82 |
Chr8:28857277 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:28857330 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C82 |
Chr8:28857396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B89,B99 |
Chr8:28857418 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:28857433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778812.1PF01535
PPR 134-161 aa
PF13812
PPR_3 167-209 aa
PF01535
PPR 169-197 aa
PF13041
PPR_2 169-211 aa
PF13812
PPR_3 187-242 aa
PF01535
PPR 202-232 aa
PF13812
PPR_3 223-265 aa
PF01535
PPR 237-265 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778812.1 |
Pfam | PF01535 |
PPR | Repeat | 134 | 161 | 5.8e-16 | 58.2 | PPR repeat |
XP_057778812.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 167 | 209 | 8e-19 | 68.2 | Pentatricopeptide repeat domain |
XP_057778812.1 |
Pfam | PF01535 |
PPR | Repeat | 169 | 197 | 5.8e-16 | 58.2 | PPR repeat |
XP_057778812.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 169 | 211 | 1.2e-24 | 86.8 | PPR repeat family |
XP_057778812.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 187 | 242 | 8e-19 | 68.2 | Pentatricopeptide repeat domain |
XP_057778812.1 |
Pfam | PF01535 |
PPR | Repeat | 202 | 232 | 5.8e-16 | 58.2 | PPR repeat |
XP_057778812.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 223 | 265 | 8e-19 | 68.2 | Pentatricopeptide repeat domain |
XP_057778812.1 |
Pfam | PF01535 |
PPR | Repeat | 237 | 265 | 5.8e-16 | 58.2 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。