Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002926`

染色体: Chr08 坐标: 29323178-29325559 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002926`
名称	SmilChr08G002926
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29323178 - 29325559 / `-`

ID 对照

NCBI Gene ID	`LOC130997527`
GeneID	`130997527`
locus_tag	`-`
NCBI Name	`LOC130997527`
原始查询	`LOC130997527`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g53360, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At3g53360%2C mitochondrial-like
Arabidopsis	`AT4G39530` (AT4G39530) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830107] identity=34.7; qcov=0.995; evalue=3.19e-101; confidence=low
Rice	`Os12g0552300` (PPS1) - identity=32.3; qcov=0.98; evalue=7.99e-93; confidence=low
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long)
InterPro	-
eggNOG	-
NR	GeneID:130997527

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057778848.1`
2	Nucleus	细胞核	0.00000	`XP_057778848.1`
3	Chromosome	染色体	0.00000	`XP_057778848.1`
4	Centromere	着丝粒	0.00000	`XP_057778848.1`
5	Chromatin	染色质	0.00000	`XP_057778848.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29323985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr8:29324038`	`CTG`	`C`	2bp_deletion	frameshift_variant	110	A1,A10,A11,A15,A16,A20,A22,A4,A6,A7,A8,A9,B10,B100,B101,B103,B109,B111,B112,B113,B114,B118,B120,B121,B13,B135,B138,B139,B15,B16,B18,B2,B24,B26,B28,B3,B30,B31,B32,B33,B34,B37,B38,B42,B43,B45,B46,B47,B48,B49,B54,B55,B56,B6,B60,B61,B63,B65,B70,B72,B74,B76,B77,B79,B8,B82,B89,B90,B92,B94,B98,B99,C1,C12,C15,C17,C19,C2,C20,C28,C29,C3,C32,C37,C45,C48,C49,C51,C54,C57,C60,C61,C63,C64,C66,C67,C68,C69,C74,C76,C77,C80,C81,C83,C86,C87,C9,D5,D7,D8
`Chr8:29324041`	`CG`	`C`	1bp_deletion	frameshift_variant	63	A1,A10,A11,A16,A20,A22,A6,A7,B101,B109,B111,B113,B114,B118,B120,B121,B13,B135,B138,B139,B16,B18,B24,B26,B30,B33,B34,B46,B47,B49,B54,B55,B56,B61,B63,B65,B70,B72,B79,B8,B90,B92,B99,C15,C28,C45,C49,C54,C57,C60,C64,C66,C69,C74,C76,C77,C81,C83,C87,C9,D5,D7,D8
`Chr8:29324171`	`A`	`AT`	1bp_insertion	frameshift_variant	1	B136
`Chr8:29324171`	`A`	`AT`	1bp_insertion	CDS_variant	1	B136
`Chr8:29324206`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B76,B99,C12,C87
`Chr8:29324575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C45
`Chr8:29324638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:29324768`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C40,D6
`Chr8:29324885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B76,B82,C1,C12
`Chr8:29325175`	`C`	`CGA`	2bp_insertion	frameshift_variant	4	B128,C10,C79,C81
`Chr8:29325175`	`C`	`CGA`	2bp_insertion	CDS_variant	4	B128,C10,C79,C81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778848.1

553 aa

276

553

PPR

PPR_2

PPR

PPR_long

PPR

PPR_3

PPR_2

PPR

PF01535 PPR 40-68 aa PF01535 PPR 70-97 aa PF01535 PPR 140-162 aa PF01535 PPR 172-202 aa PF13041 PPR_2 270-313 aa PF01535 PPR 273-298 aa PF17177 PPR_long 276-425 aa PF01535 PPR 343-369 aa PF13812 PPR_3 369-415 aa PF13041 PPR_2 369-416 aa PF01535 PPR 371-401 aa PF01535 PPR 407-433 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	40	68	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	70	97	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	140	162	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	172	202	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF13041`	PPR_2	Repeat	270	313	2e-52	175.8	PPR repeat family
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	273	298	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF17177`	PPR_long	Repeat	276	425	3.2e-09	37.2	Pentacotripeptide-repeat region of PRORP
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	343	369	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF13812`	PPR_3	Repeat	369	415	3.6e-18	66.1	Pentatricopeptide repeat domain
`XP_057778848.1`	Pfam	`PF13041`	PPR_2	Repeat	369	416	2e-52	175.8	PPR repeat family
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	371	401	6.4e-45	149.0	PPR repeat
`XP_057778848.1`	Pfam	`PF01535`	PPR	Repeat	407	433	6.4e-45	149.0	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922865.1
ATGACGCTACAAAATCTTGGTTTGTTTCTCCACCATTGCGCCAAAGCCAAGGCATTAAGACGTGGGGTTTCGCTCCACGCTGCAGCTATCAAGACAGGAAGACTAGCAGAAACCTCCATGTGCAATCACATTCTCAATTTCTACGCCAAATGTGGACTTCTTCACCCGGCCCACCAGGTGTTCGACGAAATGCCCCACAGAAATTTGGTTACCTGGTCCGCCTTGATATCTGGCTATAACCTTTGGGATACCCCCCACAA...

CDS

1 records

下载 CDS FASTA

LOC130997527
ATGACGCTACAAAATCTTGGTTTGTTTCTCCACCATTGCGCCAAAGCCAAGGCATTAAGACGTGGGGTTTCGCTCCACGCTGCAGCTATCAAGACAGGAAGACTAGCAGAAACCTCCATGTGCAATCACATTCTCAATTTCTACGCCAAATGTGGACTTCTTCACCCGGCCCACCAGGTGTTCGACGAAATGCCCCACAGAAATTTGGTTACCTGGTCCGCCTTGATATCTGGCTATAACCTTTGGGATACCCCCCACAA...

Protein

1 records

下载 Protein FASTA

XP_057778848.1
MTLQNLGLFLHHCAKAKALRRGVSLHAAAIKTGRLAETSMCNHILNFYAKCGLLHPAHQVFDEMPHRNLVTWSALISGYNLWDTPHKALQLFSEMHKHFKPNDSVFSSALSSCARSRDLNLGQQIHALALKLSYCSFSFVVNSLLLVYMKCGMCADALSVFCDSNFVQPTLVSYNIAITGLVESKLQEKGMELFVELLRRGLLPDRFSFAGLLGAGETVYGLSTVVQLHCQMVKLGLDCTSFSGNVLITLYSKFSLFQES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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