Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002935`

染色体: Chr08 坐标: 29374431-29379002 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002935`
名称	SmilChr08G002935
描述	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29374431 - 29379002 / `+`

ID 对照

NCBI Gene ID	`LOC130997537`
GeneID	`130997537`
locus_tag	`-`
NCBI Name	`LOC130997537`
原始查询	`LOC130997537`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
产物	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
Arabidopsis	`AT3G03770` (AT3G03770) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:821164] identity=57.2; qcov=0.953; evalue=0; confidence=high
Rice	`Os07g0166700` (P0039H02.137) - identity=50.3; qcov=0.981; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0016020 (membrane)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:130997537

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057778856.1`
2	Nucleus	细胞核	0.00000	`XP_057778856.1`
3	Chromosome	染色体	0.00000	`XP_057778856.1`
4	Centromere	着丝粒	0.00000	`XP_057778856.1`
5	Chromatin	染色质	0.00000	`XP_057778856.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29375946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C9
`Chr8:29376146`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,B55,C15
`Chr8:29376166`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:29376169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:29376230`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B108,B61,C33
`Chr8:29376238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,C9
`Chr8:29376506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C45
`Chr8:29376712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A19,C9
`Chr8:29376733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A19,C9
`Chr8:29376935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:29377811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9
`Chr8:29378230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778856.1

780 aa

390

780

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 31-58 aa PF00560 LRR_1 154-176 aa PF13855 LRR_8 154-213 aa PF00560 LRR_1 179-200 aa PF00560 LRR_1 203-219 aa PF00069 Pkinase 478-745 aa PF07714 PK_Tyr_Ser-Thr 481-747 aa

XP_057778857.1

780 aa

390

780

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 31-58 aa PF00560 LRR_1 154-176 aa PF13855 LRR_8 154-213 aa PF00560 LRR_1 179-200 aa PF00560 LRR_1 203-219 aa PF00069 Pkinase 478-745 aa PF07714 PK_Tyr_Ser-Thr 481-747 aa

XP_057778858.1

780 aa

390

780

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 31-58 aa PF00560 LRR_1 154-176 aa PF13855 LRR_8 154-213 aa PF00560 LRR_1 179-200 aa PF00560 LRR_1 203-219 aa PF00069 Pkinase 478-745 aa PF07714 PK_Tyr_Ser-Thr 481-747 aa

XP_057778859.1

780 aa

390

780

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 31-58 aa PF00560 LRR_1 154-176 aa PF13855 LRR_8 154-213 aa PF00560 LRR_1 179-200 aa PF00560 LRR_1 203-219 aa PF00069 Pkinase 478-745 aa PF07714 PK_Tyr_Ser-Thr 481-747 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778856.1`	Pfam	`PF08263`	LRRNT_2	Family	31	58	0.00049	21.0	Leucine rich repeat N-terminal domain
`XP_057778856.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778856.1`	Pfam	`PF13855`	LRR_8	Repeat	154	213	3.6e-12	46.6	Leucine rich repeat
`XP_057778856.1`	Pfam	`PF00560`	LRR_1	Repeat	179	200	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778856.1`	Pfam	`PF00560`	LRR_1	Repeat	203	219	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778856.1`	Pfam	`PF00069`	Pkinase	Domain	478	745	5.4e-17	62.8	Protein kinase domain
`XP_057778856.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	747	7.6e-18	65.5	Protein tyrosine and serine/threonine kinase
`XP_057778857.1`	Pfam	`PF08263`	LRRNT_2	Family	31	58	0.00049	21.0	Leucine rich repeat N-terminal domain
`XP_057778857.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778857.1`	Pfam	`PF13855`	LRR_8	Repeat	154	213	3.6e-12	46.6	Leucine rich repeat
`XP_057778857.1`	Pfam	`PF00560`	LRR_1	Repeat	179	200	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778857.1`	Pfam	`PF00560`	LRR_1	Repeat	203	219	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778857.1`	Pfam	`PF00069`	Pkinase	Domain	478	745	5.4e-17	62.8	Protein kinase domain
`XP_057778857.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	747	7.6e-18	65.5	Protein tyrosine and serine/threonine kinase
`XP_057778858.1`	Pfam	`PF08263`	LRRNT_2	Family	31	58	0.00049	21.0	Leucine rich repeat N-terminal domain
`XP_057778858.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778858.1`	Pfam	`PF13855`	LRR_8	Repeat	154	213	3.6e-12	46.6	Leucine rich repeat
`XP_057778858.1`	Pfam	`PF00560`	LRR_1	Repeat	179	200	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778858.1`	Pfam	`PF00560`	LRR_1	Repeat	203	219	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778858.1`	Pfam	`PF00069`	Pkinase	Domain	478	745	5.4e-17	62.8	Protein kinase domain
`XP_057778858.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	747	7.6e-18	65.5	Protein tyrosine and serine/threonine kinase
`XP_057778859.1`	Pfam	`PF08263`	LRRNT_2	Family	31	58	0.00049	21.0	Leucine rich repeat N-terminal domain
`XP_057778859.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778859.1`	Pfam	`PF13855`	LRR_8	Repeat	154	213	3.6e-12	46.6	Leucine rich repeat
`XP_057778859.1`	Pfam	`PF00560`	LRR_1	Repeat	179	200	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778859.1`	Pfam	`PF00560`	LRR_1	Repeat	203	219	1.5e-12	45.7	Leucine Rich Repeat
`XP_057778859.1`	Pfam	`PF00069`	Pkinase	Domain	478	745	5.4e-17	62.8	Protein kinase domain
`XP_057778859.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	481	747	7.6e-18	65.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057922873.1
TTAAGTCACAAATTTGTGGTTATATATTGATAAATTTAGGGGCAGTGCAAGTTTTAGCAAACTACCAAAACATCACCGTTAAATCTGATGGCCATTTAATACCAGAAAAAAGTGCATGTATTGTAGTAGATGACGAACTCGCACTGCTCTCACCACTAACACACAAATAAAATAAAAGACTCCTCTTCAAATCTGCAACAAGAATCTCTCTTTCTTTTTTGGGTGGTTTCTGCTTTTCTTTTTTCTTTGGTTGTTCAGTC...

XM_057922875.1
TGGCCATTTAATACCAGAAAAAAGTGCATGTATTGTAGTAGATGACGAACTCGCACTGCTCTCACCACTAACACACAAATAAAATAAAAGACTCCTCTTCAAATCTGCAACAAGAATCTCTCTTTCTTTTTTGGGTGGTTTCTGCTTTTCTTTTTTCTTTGGTTGTTCAGTCCATCAAATGGAGCTCAAAAAGCACTAATGCAGTTGTGGAATAAAGCTCATAAAGAGAGATTTCACCAAAAGAAAATTGTCGGTTTATC...

CDS

4 records

下载 CDS FASTA

LOC130997537
ATGGCAATTCCATTATATCGATCAGCAGTCCCATTTTTGCTTGTCATGTTGGTTTCAGTCTCTTGTAAAGAGCATCTGGGATCATCATATGTGCAAACTCTTTTGAGAATTAAAGACCTTCTAAATTCTCCACCTTTCCTGAGTAGCTGGAAAAATGGCATGGATTTCTGCAATAGTGAACCAACCGCGACTCTCACTGTCGTTTGCTATGATAAAACCATAACTCAGCTGCACATTGTGGGGGATTTAGGGGCTCCAAG...

Protein

4 records

下载 Protein FASTA

XP_057778856.1
MAIPLYRSAVPFLLVMLVSVSCKEHLGSSYVQTLLRIKDLLNSPPFLSSWKNGMDFCNSEPTATLTVVCYDKTITQLHIVGDLGAPRLPMNFSIDSFVGTLVRLPGLKVLTLVSLGLWGPLPSKFMRLSSLEIVNLTSNFFQGQIPPMISSLQHLQTLILDSNNFTGRLPDSLGSLSALAVLNVRNNSLHGSLPHSLGDLETLRVLVLSNNNFSGDVPDLSSLTNLQVIKLENNALGPRFPIVGQKVESIVLRNNRFSFG...

XP_057778857.1
MAIPLYRSAVPFLLVMLVSVSCKEHLGSSYVQTLLRIKDLLNSPPFLSSWKNGMDFCNSEPTATLTVVCYDKTITQLHIVGDLGAPRLPMNFSIDSFVGTLVRLPGLKVLTLVSLGLWGPLPSKFMRLSSLEIVNLTSNFFQGQIPPMISSLQHLQTLILDSNNFTGRLPDSLGSLSALAVLNVRNNSLHGSLPHSLGDLETLRVLVLSNNNFSGDVPDLSSLTNLQVIKLENNALGPRFPIVGQKVESIVLRNNRFSFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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