Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002951`

染色体: Chr08 坐标: 29533233-29536684 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002951`
名称	SmilChr08G002951
描述	uncharacterized SmilChr08G002951
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29533233 - 29536684 / `+`

ID 对照

NCBI Gene ID	`LOC130997553`
GeneID	`130997553`
locus_tag	`-`
NCBI Name	`LOC130997553`
原始查询	`LOC130997553`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368]; symbol=AT5G04885; hit=AT5G04885; species=arabidopsis; confidence=high
产物	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368]; symbol=AT5G04885; hit=AT5G04885; species=arabidopsis; confidence=high
Arabidopsis	`AT5G04885` (AT5G04885) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830368] identity=66; qcov=0.997; evalue=0; confidence=high
Rice	`Os01g0771900` - identity=67.7; qcov=0.984; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:130997553

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	0.80000	`XP_057778895.1`
2	Lysosome	溶酶体	0.20000	`XP_057778895.1`
3	Vacuole	液泡	0.20000	`XP_057778895.1`
4	Nucleus	细胞核	0.00000	`XP_057778895.1`
5	Chromosome	染色体	0.00000	`XP_057778895.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29534322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:29534406`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B55
`Chr8:29534406`	`AG`	`A`	1bp_deletion	CDS_variant	1	B55
`Chr8:29534418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:29534697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr8:29534965`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B84
`Chr8:29534965`	`C`	`CT`	1bp_insertion	CDS_variant	1	B84
`Chr8:29535069`	`CAG`	`C`	2bp_deletion	frameshift_variant	53	A2,A20,A23,A4,A5,B109,B11,B119,B123,B124,B125,B133,B14,B21,B24,B30,B33,B34,B38,B39,B42,B51,B64,B66,B67,B7,B77,B81,B87,B90,B95,C10,C12,C13,C17,C20,C25,C34,C37,C39,C42,C50,C51,C54,C59,C60,C72,C75,C76,C78,C81,D8,D9
`Chr8:29535073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B21,C19,C71
`Chr8:29535096`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B32,B91
`Chr8:29535160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,C12,C32
`Chr8:29535487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778895.1

629 aa

314

629

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 48-377 aa PF01915 Glyco_hydro_3_C 414-622 aa

XP_057778896.1

629 aa

314

629

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 48-377 aa PF01915 Glyco_hydro_3_C 414-622 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778895.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	48	377	2.7e-67	228.2	Glycosyl hydrolase family 3 N terminal domain
`XP_057778895.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	622	1.2e-34	120.8	Glycosyl hydrolase family 3 C-terminal domain
`XP_057778896.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	48	377	2.7e-67	228.2	Glycosyl hydrolase family 3 N terminal domain
`XP_057778896.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	414	622	1.2e-34	120.8	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057922912.1
TACATAAAGACCTTGTCTAACTAATACTATTATATCTTGCATTTCTTTCTTTCGCACTGACTCATCATTTTCATGCTCACAGAAAATCTCTCTCTCTCTCTCTCTATATATATATATATATATATCACCACACAAATAAGCAGAGATTGGTAGTATATCTTTTATCACGGATTGCTAAAGAGCCTGGGTATAACTGCAAACTAGAAGCCAAAAAATGGCAAAAGATGCCACCCTTGTAATGGGGCTTCTAATGCTGTGTT...

XM_057922913.1
CTGGGTATAACTGTGAGTTTCATTGGCTTTCTTTTCTTAATTTGTTTGCCATTTTCCTTTTACTTAGGGAATAATCTCAAGAATTCAGATATATTGATTGCTACACTCAGAAATACTCAATTTGTTTAGTAAGAGATGGTTGGTTGATGAAGTTTAGTTTGAGCTTTTTCTTCCCCAGCATAACAGAAGATAAATAGTTACATAGCATACCCCATCATTCGGCAAACTAGAAGCCAAAAAATGGCAAAAGATGCCACCCT...

CDS

2 records

下载 CDS FASTA

LOC130997553
ATGGCAAAAGATGCCACCCTTGTAATGGGGCTTCTAATGCTGTGTTGGTTGGGAGGCATAGCAGATGCAGAGTACAAACTGTACAAAGATCCTAAAAAGCCGATTAATCGAAGAATCAAGGATTTGTTAGGGAGGATGAGCTTAGAGGAAAAGATAGGGCAGATGATGCAGATTGAACGTAGCGAGGCAATGGCATCACCCCAAGTTATGAGGGACTACTACATAGGGAGTGTGTTGAGTGGTGGAGGGAGTGGTCCAGG...

Protein

2 records

下载 Protein FASTA

XP_057778895.1
MAKDATLVMGLLMLCWLGGIADAEYKLYKDPKKPINRRIKDLLGRMSLEEKIGQMMQIERSEAMASPQVMRDYYIGSVLSGGGSGPGAMAPPEKWVDMVNDIQKGSLSTRLAIPMIYGIDAVHGHNTVYNATIFPHNIGLGATRDPELIKKIGAATALELRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPKVVKEMSEIIVGLQGEIPPNSRKGVPYVSGQDKVAACAKHYVGDGGTTRGINMNDTVTSMHGLLSIHM...

XP_057778896.1
MAKDATLVMGLLMLCWLGGIADAEYKLYKDPKKPINRRIKDLLGRMSLEEKIGQMMQIERSEAMASPQVMRDYYIGSVLSGGGSGPGAMAPPEKWVDMVNDIQKGSLSTRLAIPMIYGIDAVHGHNTVYNATIFPHNIGLGATRDPELIKKIGAATALELRATGIPYTFAPCIAVCRDPRWGRCYESYSEDPKVVKEMSEIIVGLQGEIPPNSRKGVPYVSGQDKVAACAKHYVGDGGTTRGINMNDTVTSMHGLLSIHM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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