当前解析结果
SmilChr08G002962| 统一新 Gene ID | SmilChr08G002962 |
|---|---|
| 名称 | SmilChr08G002962 |
| 描述 | kinesin-like protein KIN-10C |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 29644403 - 29648138 / + |
| NCBI Gene ID | LOC130997561 |
|---|---|
| GeneID | 130997561 |
| locus_tag | - |
| NCBI Name | LOC130997561 |
| 原始查询 | LOC130997561 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-10C |
| 产物 | kinesin-like protein KIN-10C |
| Arabidopsis | AT5G02370 (AT5G02370)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:831740] identity=49.6; qcov=0.929; evalue=2.86e-168; confidence=high |
| Rice | Os05g0459400 (KIN10C)- identity=51.8; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0007052 (mitotic spindle organization); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF00633 (HHH); PF12836 (HHH_3); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997561 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057778908.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057778908.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057778908.1 |
| 4 | Spindle pole | Spindle pole | 0.80000 | XP_057778908.1 |
| 5 | Chromosome | 染色体 | 0.60000 | XP_057778908.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:29644532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:29644564 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:29644826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B30,B9,C71 |
Chr8:29644860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:29644929 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:29645543 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:29645697 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:29645996 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C33 |
Chr8:29646306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B35,C22,C4,C40,C43 |
Chr8:29646786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,B89 |
Chr8:29647050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B2,B67,B7,C33 |
Chr8:29647570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B41,C70,C86 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778908.1PF16796
Microtub_bd 30-175 aa
PF00225
Kinesin 36-353 aa
PF00633
HHH 552-574 aa
PF12836
HHH_3 552-593 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778908.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 30 | 175 | 1.1e-15 | 58.6 | Microtubule binding |
XP_057778908.1 |
Pfam | PF00225 |
Kinesin | Domain | 36 | 353 | 4.5e-89 | 299.4 | Kinesin motor domain |
XP_057778908.1 |
Pfam | PF00633 |
HHH | Motif | 552 | 574 | 9.5e-06 | 25.9 | Helix-hairpin-helix motif |
XP_057778908.1 |
Pfam | PF12836 |
HHH_3 | Domain | 552 | 593 | 1.4e-06 | 29.0 | Helix-hairpin-helix motif |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。