Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002973`

染色体: Chr08 坐标: 29764779-29767733 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002973`
名称	SmilChr08G002973
描述	putative E3 ubiquitin-protein ligase XBAT31
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29764779 - 29767733 / `-`

ID 对照

NCBI Gene ID	`LOC130997573`
GeneID	`130997573`
locus_tag	`-`
NCBI Name	`LOC130997573`
原始查询	`LOC130997573`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase XBAT31
产物	putative E3 ubiquitin-protein ligase XBAT31
Arabidopsis	`AT2G28840` (XBAT31) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:817433] identity=59; qcov=1.05; evalue=0; confidence=high
Rice	`Os05g0112000` (XB3) - identity=59.1; qcov=1.03; evalue=6.09e-173; confidence=high
GO	GO:0005515 (protein binding); GO:0009707 (chloroplast outer membrane); GO:0030941 (chloroplast targeting sequence receptor activity); GO:0045036 (protein targeting to chloroplast)
KEGG	-
Pfam	PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF24921 (RING_XB3-XBAT31)
InterPro	-
eggNOG	-
NR	GeneID:130997573

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057778920.1`
2	Cytosol	细胞质基质	0.60000	`XP_057778920.1`
3	Nucleus	细胞核	0.00000	`XP_057778920.1`
4	Chromosome	染色体	0.00000	`XP_057778920.1`
5	Centromere	着丝粒	0.00000	`XP_057778920.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29765250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr8:29765726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,C45,C85
`Chr8:29765777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B14,B31,B76,C71,D5
`Chr8:29765861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,C10,C79,C81
`Chr8:29765872`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr8:29766224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B54
`Chr8:29766248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:29766275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:29766285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,D2
`Chr8:29766378`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,C16,C26,C6,C79
`Chr8:29766406`	`T`	`TTA`	2bp_insertion	frameshift_variant	1	D10
`Chr8:29766406`	`T`	`TTA`	2bp_insertion	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778920.1

436 aa

218

436

Ank_2

Ank

Ank_4

Ank

Ank_4

Ank_3

Ank_2

Ank

Ank_3

Ank

Ank_5

Ank_2

RING_XB3-XBAT31

PF12796 Ank_2 15-107 aa PF00023 Ank 48-76 aa PF13637 Ank_4 50-99 aa PF00023 Ank 80-107 aa PF13637 Ank_4 85-132 aa PF13606 Ank_3 112-135 aa PF12796 Ank_2 112-183 aa PF00023 Ank 113-136 aa PF00023 Ank 158-187 aa PF13606 Ank_3 195-220 aa PF00023 Ank 195-225 aa PF13857 Ank_5 195-232 aa PF12796 Ank_2 195-247 aa PF24921 RING_XB3-XBAT31 318-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778920.1`	Pfam	`PF12796`	Ank_2	Repeat	15	107	3.8e-40	137.1	Ankyrin repeats (3 copies)
`XP_057778920.1`	Pfam	`PF00023`	Ank	Repeat	48	76	6.6e-40	133.6	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF13637`	Ank_4	Repeat	50	99	4.6e-24	84.7	Ankyrin repeats (many copies)
`XP_057778920.1`	Pfam	`PF00023`	Ank	Repeat	80	107	6.6e-40	133.6	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF13637`	Ank_4	Repeat	85	132	4.6e-24	84.7	Ankyrin repeats (many copies)
`XP_057778920.1`	Pfam	`PF13606`	Ank_3	Repeat	112	135	6.7e-27	91.0	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF12796`	Ank_2	Repeat	112	183	3.8e-40	137.1	Ankyrin repeats (3 copies)
`XP_057778920.1`	Pfam	`PF00023`	Ank	Repeat	113	136	6.6e-40	133.6	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF00023`	Ank	Repeat	158	187	6.6e-40	133.6	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF13606`	Ank_3	Repeat	195	220	6.7e-27	91.0	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF00023`	Ank	Repeat	195	225	6.6e-40	133.6	Ankyrin repeat
`XP_057778920.1`	Pfam	`PF13857`	Ank_5	Repeat	195	232	1.2e-30	105.9	Ankyrin repeats (many copies)
`XP_057778920.1`	Pfam	`PF12796`	Ank_2	Repeat	195	247	3.8e-40	137.1	Ankyrin repeats (3 copies)
`XP_057778920.1`	Pfam	`PF24921`	RING_XB3-XBAT31	Domain	318	370	8.4e-20	71.3	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922937.1
ATGAGAAGAAGAGCGTGATCGATTTTTCAGTTAATAAAAATCGAGATTCCAGCATTAGGTCAAAAATCGAATATTTTAATTTGATTGGCTTTAATCCGGAAAGTCCGTATAATTTTTCGAGGTGCCCTAAATTAAATCCGCAATCTGCCCGAAAACGCAGAAAGTTGGTGCCCGGAATCCTGCGGGCAGCCCAAACTCCAATACCTTTCCTACTTTTCATCGCTTGTGTCCCCTCCGTTCCACTATCATCACACATTCAC...

CDS

1 records

下载 CDS FASTA

LOC130997573
ATGGGGCAGGGCCTCAGCTGCAGTGAGCTCGAAGACACTGAGCTGTTCAACGCAGTTCAAAACGGAGAGGTCGACACCGTCCAAGCGCTTGCCGCCCAAGACCCAAATTTGTTGACGCTCAAAACCGTTCACGGACGCCTCTCCGCGCTCCACGTGGCAGCTGCGAACGGGCGGGTGGAGGTACTCTCTGTTCTTTTAGATCGGTTTGGGAATCCAGATATCTTGAATCGGCACAAACAGACTCCATTGATGTTAGCTGC...

Protein

1 records

下载 Protein FASTA

XP_057778920.1
MGQGLSCSELEDTELFNAVQNGEVDTVQALAAQDPNLLTLKTVHGRLSALHVAAANGRVEVLSVLLDRFGNPDILNRHKQTPLMLAAIHGKSSCVERLIQAGANVLLFDTLCGRTCLHYAAYYGHSDCLQLILSAGNSTPVAQSWGFSRFVNIRDGSGATPLHLASRQRRSECVHILLSSGALVCASTGGYSYPGSTPLHLAARGGSLDCVRELLARGADRLQRDSSGRIPYMVAVKHKHDACAALLNPLAPEPLTWPSP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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